Variant report

Variant	rs12487332
Chromosome Location	chr3:99370346-99370347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12107500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12486836	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12495115	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12495263	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12496018	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1418975	0.84[AMR][1000 genomes]
rs16841583	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17777228	0.90[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73150246	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73150248	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7624987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7645927	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7653590	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9849369	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9942067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99365000-99370400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:99365000-99371600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:99366800-99372600	Genic enhancers	Osteobl	bone
4	chr3:99367200-99370400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:99367200-99370400	Weak transcription	Fetal Lung	lung
6	chr3:99367200-99372000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:99367200-99372000	Weak transcription	Aorta	Aorta
8	chr3:99367200-99372800	Weak transcription	Stomach Mucosa	stomach
9	chr3:99367200-99373400	Weak transcription	Esophagus	oesophagus
10	chr3:99367600-99370400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:99367800-99370800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:99367800-99371800	Weak transcription	NHEK	skin
13	chr3:99367800-99372800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:99368000-99372000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:99369000-99370600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:99369000-99373000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:99369400-99371600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:99369600-99370600	Enhancers	Stomach Smooth Muscle	stomach
19	chr3:99369600-99371200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:99369600-99371400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:99369600-99372600	Enhancers	NHDF-Ad	bronchial
22	chr3:99369800-99370800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:99369800-99371000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:99369800-99371200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:99369800-99371400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:99370000-99370400	Flanking Active TSS	NHLF	lung
27	chr3:99370000-99370600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:99370000-99370600	Enhancers	Adipose Nuclei	Adipose
29	chr3:99370000-99370600	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr3:99370000-99370600	Enhancers	Fetal Kidney	kidney
31	chr3:99370000-99370600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr3:99370000-99370600	Enhancers	Hela-S3	cervix
33	chr3:99370000-99370800	Enhancers	A549	lung
34	chr3:99370000-99370800	Enhancers	HMEC	breast
35	chr3:99370000-99372600	Enhancers	Colon Smooth Muscle	Colon
36	chr3:99370000-99372600	Genic enhancers	HSMM	muscle
37	chr3:99370200-99370400	Flanking Active TSS	NH-A	brain
38	chr3:99370200-99370600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:99370200-99370600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:99370200-99370600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr3:99370200-99370600	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
42	chr3:99370200-99370600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr3:99370200-99370600	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr3:99370200-99370600	Enhancers	Right Atrium	heart
45	chr3:99370200-99370600	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr3:99370200-99370600	Flanking Active TSS	HSMMtube	muscle
47	chr3:99370200-99370600	Transcr. at gene 5' and 3'	HUVEC	blood vessel
48	chr3:99370200-99370800	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr3:99370200-99370800	Enhancers	Fetal Stomach	stomach
50	chr3:99370200-99370800	Enhancers	Ovary	ovary

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