Variant report

Variant	rs12496018
Chromosome Location	chr3:99360745-99360746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12107500	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12486836	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12487332	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12495115	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12495263	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1418975	0.84[AMR][1000 genomes]
rs16841583	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17777228	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73150246	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73150248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624987	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7645927	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7653590	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9849369	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9942067	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99354400-99362000	Active TSS	Aorta	Aorta
2	chr3:99356000-99360800	Active TSS	NHLF	lung
3	chr3:99357400-99361600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:99357600-99363800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:99357800-99363400	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:99358000-99363200	Weak transcription	Brain Anterior Caudate	brain
7	chr3:99358000-99363600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:99358000-99363800	Weak transcription	Ovary	ovary
9	chr3:99358000-99364000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:99358000-99369400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:99358200-99362600	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:99358200-99363600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:99358800-99364200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:99359000-99361400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:99359200-99362800	Weak transcription	HSMMtube	muscle
16	chr3:99359200-99363000	Transcr. at gene 5' and 3'	HUVEC	blood vessel
17	chr3:99359400-99361400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr3:99359600-99361400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:99359600-99362600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:99359800-99361600	Transcr. at gene 5' and 3'	Osteobl	bone
21	chr3:99359800-99363000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:99359800-99364800	Genic enhancers	HSMM	muscle
23	chr3:99360000-99361200	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr3:99360000-99363800	Weak transcription	Adipose Nuclei	Adipose
25	chr3:99360000-99370200	Weak transcription	Right Atrium	heart
26	chr3:99360200-99361400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
27	chr3:99360200-99362000	Weak transcription	NHEK	skin
28	chr3:99360200-99363200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:99360200-99363800	Weak transcription	HMEC	breast
30	chr3:99360400-99361200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:99360400-99361200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:99360400-99361200	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr3:99360400-99361200	Flanking Active TSS	NHDF-Ad	bronchial
34	chr3:99360600-99360800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:99360600-99361200	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr3:99360600-99361400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:99360600-99361400	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
38	chr3:99360600-99362000	Enhancers	NH-A	brain
39	chr3:99360600-99362600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:99360600-99363800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr3:99360600-99364400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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