Variant report

Variant	rs16841583
Chromosome Location	chr3:99370604-99370605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12107500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12486836	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12487332	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495115	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12495263	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12496018	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1418975	0.84[AMR][1000 genomes]
rs17777228	0.92[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73150246	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73150248	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7624987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7645927	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7653590	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9849369	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9942067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99365000-99371600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:99366800-99372600	Genic enhancers	Osteobl	bone
3	chr3:99367200-99372000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:99367200-99372000	Weak transcription	Aorta	Aorta
5	chr3:99367200-99372800	Weak transcription	Stomach Mucosa	stomach
6	chr3:99367200-99373400	Weak transcription	Esophagus	oesophagus
7	chr3:99367800-99370800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:99367800-99371800	Weak transcription	NHEK	skin
9	chr3:99367800-99372800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:99368000-99372000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:99369000-99373000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:99369400-99371600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:99369600-99371200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:99369600-99371400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:99369600-99372600	Enhancers	NHDF-Ad	bronchial
16	chr3:99369800-99370800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:99369800-99371000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:99369800-99371200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:99369800-99371400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:99370000-99370800	Enhancers	A549	lung
21	chr3:99370000-99370800	Enhancers	HMEC	breast
22	chr3:99370000-99372600	Enhancers	Colon Smooth Muscle	Colon
23	chr3:99370000-99372600	Genic enhancers	HSMM	muscle
24	chr3:99370200-99370800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr3:99370200-99370800	Enhancers	Fetal Stomach	stomach
26	chr3:99370200-99370800	Enhancers	Ovary	ovary
27	chr3:99370200-99371000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr3:99370200-99372200	Enhancers	Rectal Smooth Muscle	rectum
29	chr3:99370400-99370800	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr3:99370400-99370800	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr3:99370400-99371000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:99370400-99371400	Enhancers	Fetal Lung	lung
33	chr3:99370400-99371400	Enhancers	NH-A	brain
34	chr3:99370400-99371400	Enhancers	NHLF	lung
35	chr3:99370600-99371000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:99370600-99371600	Enhancers	HSMMtube	muscle
37	chr3:99370600-99372000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:99370600-99372600	Weak transcription	Adipose Nuclei	Adipose
39	chr3:99370600-99372600	Genic enhancers	HUVEC	blood vessel
40	chr3:99370600-99373200	Genic enhancers	Muscle Satellite Cultured Cells	--
41	chr3:99370600-99375400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr3:99370600-99378000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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