Variant report

Variant	rs17777228
Chromosome Location	chr3:99368027-99368028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12107500	0.92[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12486836	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12487332	0.90[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495115	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12495263	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12496018	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1418975	0.84[AMR][1000 genomes]
rs16841583	0.92[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73150246	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73150248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7624987	0.92[CEU][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7645927	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7653590	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9849369	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9942067	0.92[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99358000-99369400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99360000-99370200	Weak transcription	Right Atrium	heart
3	chr3:99362600-99368800	Enhancers	Colon Smooth Muscle	Colon
4	chr3:99362800-99369200	Enhancers	NHLF	lung
5	chr3:99363800-99369000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:99364000-99370200	Weak transcription	Ovary	ovary
7	chr3:99364400-99370000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:99364800-99368600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:99365000-99370200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr3:99365000-99370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:99365000-99370400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:99365000-99371600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:99365200-99370200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:99365400-99369800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:99365600-99369600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr3:99365600-99369800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:99366000-99368200	Enhancers	Rectal Smooth Muscle	rectum
18	chr3:99366200-99368200	Enhancers	Adipose Nuclei	Adipose
19	chr3:99366800-99368200	Enhancers	HSMMtube	muscle
20	chr3:99366800-99372600	Genic enhancers	Osteobl	bone
21	chr3:99367200-99370200	Genic enhancers	HUVEC	blood vessel
22	chr3:99367200-99370400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr3:99367200-99370400	Weak transcription	Fetal Lung	lung
24	chr3:99367200-99372000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:99367200-99372000	Weak transcription	Aorta	Aorta
26	chr3:99367200-99372800	Weak transcription	Stomach Mucosa	stomach
27	chr3:99367200-99373400	Weak transcription	Esophagus	oesophagus
28	chr3:99367600-99368200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:99367600-99368400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:99367600-99369000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:99367600-99369200	Enhancers	NHDF-Ad	bronchial
32	chr3:99367600-99370400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:99367800-99369000	Weak transcription	NH-A	brain
34	chr3:99367800-99370000	Weak transcription	HMEC	breast
35	chr3:99367800-99370000	Strong transcription	HSMM	muscle
36	chr3:99367800-99370200	Genic enhancers	Muscle Satellite Cultured Cells	--
37	chr3:99367800-99370200	Weak transcription	Fetal Stomach	stomach
38	chr3:99367800-99370800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:99367800-99371800	Weak transcription	NHEK	skin
40	chr3:99367800-99372800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr3:99368000-99368200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr3:99368000-99368200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:99368000-99368200	Enhancers	Fetal Muscle Leg	muscle
44	chr3:99368000-99369000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr3:99368000-99370200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr3:99368000-99372000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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