Variant report

Variant	rs10511175
Chromosome Location	chr3:99280948-99280949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99279758..99281912-chr3:99291680..99293883,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12107500	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs12486836	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487332	1.00[CEU][hapmap]
rs12492014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495115	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495263	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418975	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841583	1.00[CEU][hapmap]
rs17777228	0.92[CEU][hapmap];0.81[YRI][hapmap]
rs55980409	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59765387	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61068691	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134339	1.00[ASN][1000 genomes]
rs73134347	1.00[ASN][1000 genomes]
rs73134355	1.00[ASN][1000 genomes]
rs73134368	1.00[ASN][1000 genomes]
rs73144632	1.00[ASN][1000 genomes]
rs73144634	1.00[ASN][1000 genomes]
rs73144644	1.00[ASN][1000 genomes]
rs73144645	1.00[ASN][1000 genomes]
rs73144648	1.00[ASN][1000 genomes]
rs73144652	1.00[ASN][1000 genomes]
rs73144655	1.00[ASN][1000 genomes]
rs73144677	1.00[ASN][1000 genomes]
rs73148209	1.00[ASN][1000 genomes]
rs73148211	1.00[ASN][1000 genomes]
rs73148262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148273	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148280	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148292	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148297	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624987	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7645927	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653590	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849369	1.00[ASN][1000 genomes]
rs9942067	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99270600-99281600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:99279200-99281200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:99280400-99281000	Weak transcription	HSMM	muscle

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