Variant report

Variant	rs73148292
Chromosome Location	chr3:99298667-99298668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10511175	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12486836	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12492014	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495115	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495263	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418975	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55980409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59765387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61068691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134339	1.00[ASN][1000 genomes]
rs73134347	1.00[ASN][1000 genomes]
rs73134355	1.00[ASN][1000 genomes]
rs73134368	1.00[ASN][1000 genomes]
rs73144632	1.00[ASN][1000 genomes]
rs73144634	1.00[ASN][1000 genomes]
rs73144644	1.00[ASN][1000 genomes]
rs73144645	1.00[ASN][1000 genomes]
rs73144648	1.00[ASN][1000 genomes]
rs73144652	1.00[ASN][1000 genomes]
rs73144655	1.00[ASN][1000 genomes]
rs73144677	1.00[ASN][1000 genomes]
rs73148209	1.00[ASN][1000 genomes]
rs73148211	1.00[ASN][1000 genomes]
rs73148262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7645927	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653590	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849369	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99295600-99299200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:99295800-99299200	Enhancers	HSMM	muscle
3	chr3:99297600-99298800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:99298400-99299600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:99298600-99305200	Weak transcription	NHDF-Ad	bronchial
6	chr3:99298600-99305400	Weak transcription	HSMMtube	muscle

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