Variant report

Variant	rs73148380
Chromosome Location	chr3:24356232-24356233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24354788..24356355-chr3:24383091..24385499,2	K562	blood:
2	chr3:24352056..24355550-chr3:24355635..24358135,4	K562	blood:
3	chr3:24351139..24352697-chr3:24355793..24358073,2	MCF-7	breast:
4	chr3:24355347..24357297-chr3:24560639..24562872,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4640503	1.00[AMR][1000 genomes]
rs734443	1.00[AMR][1000 genomes]
rs7624363	1.00[AMR][1000 genomes]
rs967826	1.00[AMR][1000 genomes]
rs9831766	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24341800-24358200	Weak transcription	Pancreas	Pancrea
2	chr3:24345000-24357800	Weak transcription	HepG2	liver
3	chr3:24345200-24356600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:24345200-24359400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:24347400-24359800	Weak transcription	NHDF-Ad	bronchial
6	chr3:24348200-24357800	Weak transcription	Stomach Mucosa	stomach
7	chr3:24348200-24358000	Weak transcription	Gastric	stomach
8	chr3:24348200-24358000	Weak transcription	K562	blood
9	chr3:24348200-24359400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr3:24348400-24357200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:24348400-24381000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:24350000-24359800	Weak transcription	Fetal Lung	lung
13	chr3:24350600-24358200	Weak transcription	Lung	lung
14	chr3:24352200-24358000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:24352800-24357000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:24353000-24357600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:24353600-24356600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:24353600-24357800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr3:24353600-24358000	Weak transcription	Psoas Muscle	Psoas
20	chr3:24354200-24357200	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:24354600-24356800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:24354800-24356600	Weak transcription	Fetal Intestine Small	intestine
23	chr3:24354800-24356800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:24354800-24357200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr3:24355000-24356600	Weak transcription	Aorta	Aorta
26	chr3:24355000-24356600	Weak transcription	Left Ventricle	heart
27	chr3:24355000-24357200	Weak transcription	Adipose Nuclei	Adipose
28	chr3:24355000-24358000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr3:24355000-24358000	Weak transcription	Right Atrium	heart
30	chr3:24355000-24380000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr3:24356000-24356600	Strong transcription	Fetal Intestine Large	intestine
32	chr3:24356000-24359600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:24356200-24357200	Strong transcription	Liver	Liver
34	chr3:24356200-24362800	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links