Variant report

Variant	rs9831766
Chromosome Location	chr3:24443312-24443313
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12636416	0.83[ASN][1000 genomes]
rs4266131	0.98[ASN][1000 genomes]
rs4300959	0.98[ASN][1000 genomes]
rs4640503	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59914825	0.98[ASN][1000 genomes]
rs73148380	1.00[AMR][1000 genomes]
rs734443	1.00[AMR][1000 genomes]
rs7624363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs967826	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24430600-24443600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:24432200-24445200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:24432600-24448400	Weak transcription	Gastric	stomach
4	chr3:24432600-24448600	Weak transcription	Right Ventricle	heart
5	chr3:24440800-24443600	Enhancers	Stomach Mucosa	stomach
6	chr3:24440800-24444400	Enhancers	Fetal Intestine Large	intestine
7	chr3:24440800-24444400	Enhancers	Fetal Intestine Small	intestine
8	chr3:24441000-24443800	Enhancers	Colon Smooth Muscle	Colon
9	chr3:24441000-24443800	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr3:24441200-24443600	Enhancers	Fetal Lung	lung
11	chr3:24441400-24443800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr3:24441400-24443800	Enhancers	Brain Germinal Matrix	brain
13	chr3:24441600-24443600	Enhancers	Liver	Liver
14	chr3:24441600-24443800	Enhancers	Fetal Kidney	kidney
15	chr3:24442000-24443600	Enhancers	Rectal Smooth Muscle	rectum
16	chr3:24442000-24443600	Enhancers	Hela-S3	cervix
17	chr3:24442000-24469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr3:24442400-24443600	Enhancers	NHDF-Ad	bronchial
19	chr3:24442600-24443400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:24442800-24443400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:24442800-24443400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr3:24443000-24443400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr3:24443000-24443600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:24443000-24443600	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr3:24443000-24443600	Bivalent Enhancer	Fetal Brain Male	brain
26	chr3:24443000-24443800	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr3:24443200-24443400	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr3:24443200-24443400	Enhancers	Small Intestine	intestine
29	chr3:24443200-24443600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr3:24443200-24443600	Enhancers	Left Ventricle	heart
31	chr3:24443200-24443800	Enhancers	Aorta	Aorta
32	chr3:24443200-24443800	Enhancers	Ovary	ovary
33	chr3:24443200-24443800	Enhancers	Pancreas	Pancrea
34	chr3:24443200-24443800	Enhancers	Psoas Muscle	Psoas
35	chr3:24443200-24443800	Enhancers	Sigmoid Colon	Sigmoid Colon

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