Variant report

Variant	rs12636416
Chromosome Location	chr3:24420325-24420326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24364862..24367496-chr3:24418521..24420748,2	K562	blood:
2	chr3:24414427..24416637-chr3:24418251..24421032,2	MCF-7	breast:
3	chr3:24413191..24415623-chr3:24419821..24421904,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12638970	0.89[ASN][1000 genomes]
rs12639559	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4266131	0.85[ASN][1000 genomes]
rs4300959	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59914825	0.85[ASN][1000 genomes]
rs73150375	1.00[AMR][1000 genomes]
rs73150381	1.00[AMR][1000 genomes]
rs73823280	1.00[AMR][1000 genomes]
rs73823291	1.00[AMR][1000 genomes]
rs9831766	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24394000-24431400	Weak transcription	Gastric	stomach
2	chr3:24412400-24421000	Weak transcription	Right Atrium	heart
3	chr3:24412400-24428400	Weak transcription	NHDF-Ad	bronchial
4	chr3:24414200-24423000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:24415200-24421200	Weak transcription	HMEC	breast
6	chr3:24416600-24421600	Weak transcription	Fetal Kidney	kidney
7	chr3:24417600-24420600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr3:24417800-24422000	Enhancers	K562	blood
9	chr3:24418000-24429200	Weak transcription	Right Ventricle	heart
10	chr3:24418000-24429800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:24418000-24430000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:24418200-24421400	Weak transcription	Stomach Mucosa	stomach
13	chr3:24418200-24429200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:24418200-24429800	Weak transcription	Fetal Lung	lung
15	chr3:24419000-24429000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:24419000-24429000	Weak transcription	Pancreas	Pancrea
17	chr3:24419000-24429200	Weak transcription	Left Ventricle	heart
18	chr3:24419200-24420600	Enhancers	Fetal Intestine Small	intestine
19	chr3:24419600-24420800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr3:24419600-24421000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:24419800-24421000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:24420000-24420600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr3:24420000-24421200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:24420200-24420600	Weak transcription	Colon Smooth Muscle	Colon
25	chr3:24420200-24420600	Weak transcription	Psoas Muscle	Psoas
26	chr3:24420200-24421000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr3:24420200-24426800	Weak transcription	Aorta	Aorta
28	chr3:24420200-24426800	Weak transcription	Fetal Intestine Large	intestine
29	chr3:24420200-24441600	Weak transcription	Liver	Liver

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