Variant report

Variant	rs73150375
Chromosome Location	chr3:24468998-24468999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr3:24468774-24469339	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24468236..24470547-chr3:24471524..24477489,5	K562	blood:
2	chr3:24468904..24470956-chr3:24474502..24476814,2	MCF-7	breast:

Variant related genes	Relation type
RPL31P20	TF binding region
ENSG00000229756	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12636416	1.00[AMR][1000 genomes]
rs12639559	1.00[AMR][1000 genomes]
rs4300959	1.00[AMR][1000 genomes]
rs4627707	1.00[EUR][1000 genomes]
rs73150334	1.00[EUR][1000 genomes]
rs73150381	1.00[AMR][1000 genomes]
rs73823280	1.00[AMR][1000 genomes]
rs73823291	1.00[AMR][1000 genomes]
rs745920	1.00[EUR][1000 genomes]
rs9816999	1.00[EUR][1000 genomes]
rs9828157	1.00[EUR][1000 genomes]
rs9881014	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24442000-24469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:24443800-24475800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:24446000-24476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:24458400-24469800	Weak transcription	Right Ventricle	heart
5	chr3:24458800-24490200	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:24460800-24476600	Weak transcription	Left Ventricle	heart
7	chr3:24464600-24469800	Weak transcription	Psoas Muscle	Psoas
8	chr3:24464800-24475400	Weak transcription	Aorta	Aorta
9	chr3:24466200-24474600	Weak transcription	Fetal Intestine Small	intestine
10	chr3:24467200-24469000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr3:24467200-24470000	Enhancers	Brain Germinal Matrix	brain
12	chr3:24468000-24469200	Enhancers	Fetal Brain Male	brain
13	chr3:24468400-24469000	Enhancers	Fetal Lung	lung
14	chr3:24468400-24469600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:24468400-24470200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr3:24468400-24470600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr3:24468400-24470600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:24468600-24469000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr3:24468600-24469800	Weak transcription	Fetal Brain Female	brain
20	chr3:24468600-24470000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr3:24468600-24470200	Enhancers	Primary hematopoietic stem cells	blood
22	chr3:24468800-24469800	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links