Variant report

Variant	rs745920
Chromosome Location	chr3:24476192-24476193
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24476152..24478152-chr3:24480249..24482235,2	K562	blood:
2	chr3:24468904..24470956-chr3:24474502..24476814,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4627707	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73150334	1.00[EUR][1000 genomes]
rs73150375	1.00[EUR][1000 genomes]
rs9816999	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9819977	0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9828157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9881014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24446000-24476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24458800-24490200	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:24460800-24476600	Weak transcription	Left Ventricle	heart
4	chr3:24470200-24479000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:24472600-24478800	Weak transcription	Fetal Lung	lung
6	chr3:24474600-24480000	Enhancers	Fetal Intestine Small	intestine
7	chr3:24474800-24476400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr3:24474800-24483600	Enhancers	Fetal Intestine Large	intestine
9	chr3:24475000-24476600	Enhancers	Fetal Heart	heart
10	chr3:24475200-24476400	Enhancers	Duodenum Mucosa	Duodenum
11	chr3:24475200-24476400	Enhancers	K562	blood
12	chr3:24475400-24476400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr3:24475400-24477200	Enhancers	Aorta	Aorta
14	chr3:24475400-24478200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr3:24475400-24480000	Weak transcription	Pancreas	Pancrea
16	chr3:24475400-24480400	Enhancers	HepG2	liver
17	chr3:24475600-24476200	Enhancers	Stomach Mucosa	stomach
18	chr3:24475600-24476600	Weak transcription	Brain Germinal Matrix	brain
19	chr3:24475800-24476200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr3:24475800-24476400	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr3:24475800-24477000	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr3:24475800-24478400	Enhancers	Psoas Muscle	Psoas
23	chr3:24476000-24476200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:24476000-24477000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr3:24476000-24477600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr3:24476000-24479400	Enhancers	Liver	Liver

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