Variant report

Variant	rs73150334
Chromosome Location	chr3:24422241-24422242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24417452..24419751-chr3:24421760..24423722,3	K562	blood:
2	chr3:24422019..24424852-chr3:24535940..24537735,3	MCF-7	breast:
3	chr3:24417175..24419613-chr3:24421203..24423602,2	K562	blood:
4	chr3:24421950..24424511-chr3:24434114..24437100,2	K562	blood:
5	chr3:24421343..24423559-chr3:24425384..24427229,2	K562	blood:

Variant related genes	Relation type
ENSG00000151090	Chromatin interaction
ENSG00000228791	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4627707	1.00[EUR][1000 genomes]
rs73150375	1.00[EUR][1000 genomes]
rs745920	1.00[EUR][1000 genomes]
rs9816999	1.00[EUR][1000 genomes]
rs9828157	1.00[EUR][1000 genomes]
rs9881014	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24394000-24431400	Weak transcription	Gastric	stomach
2	chr3:24412400-24428400	Weak transcription	NHDF-Ad	bronchial
3	chr3:24414200-24423000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:24418000-24429200	Weak transcription	Right Ventricle	heart
5	chr3:24418000-24429800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:24418000-24430000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:24418200-24429200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:24418200-24429800	Weak transcription	Fetal Lung	lung
9	chr3:24419000-24429000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:24419000-24429000	Weak transcription	Pancreas	Pancrea
11	chr3:24419000-24429200	Weak transcription	Left Ventricle	heart
12	chr3:24420200-24426800	Weak transcription	Aorta	Aorta
13	chr3:24420200-24426800	Weak transcription	Fetal Intestine Large	intestine
14	chr3:24420200-24441600	Weak transcription	Liver	Liver
15	chr3:24420600-24423400	Enhancers	Colon Smooth Muscle	Colon
16	chr3:24420600-24427800	Weak transcription	Fetal Intestine Small	intestine
17	chr3:24421200-24429000	Weak transcription	Psoas Muscle	Psoas
18	chr3:24421200-24429800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:24421400-24422400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr3:24421800-24427800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr3:24422000-24422600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:24422000-24428000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:24422000-24430000	Weak transcription	K562	blood

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