Variant report

Variant	rs73148760
Chromosome Location	chr5:99463596-99463597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11948116	1.00[EUR][1000 genomes]
rs11949528	1.00[EUR][1000 genomes]
rs11950235	1.00[EUR][1000 genomes]
rs11952192	1.00[EUR][1000 genomes]
rs11952199	1.00[EUR][1000 genomes]
rs11952934	1.00[EUR][1000 genomes]
rs12109233	1.00[EUR][1000 genomes]
rs12109763	1.00[EUR][1000 genomes]
rs12109854	1.00[EUR][1000 genomes]
rs12110159	1.00[EUR][1000 genomes]
rs17161451	1.00[EUR][1000 genomes]
rs59771332	1.00[EUR][1000 genomes]
rs60398983	1.00[EUR][1000 genomes]
rs73148755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73148763	1.00[EUR][1000 genomes]
rs73148764	1.00[EUR][1000 genomes]
rs73149889	1.00[EUR][1000 genomes]
rs73149891	1.00[EUR][1000 genomes]
rs73150910	1.00[EUR][1000 genomes]
rs73150913	1.00[EUR][1000 genomes]
rs73150915	1.00[EUR][1000 genomes]
rs73150959	1.00[EUR][1000 genomes]
rs73150961	1.00[EUR][1000 genomes]
rs73150997	1.00[EUR][1000 genomes]
rs73150999	1.00[EUR][1000 genomes]
rs73151000	1.00[EUR][1000 genomes]
rs73151001	1.00[EUR][1000 genomes]
rs73151527	1.00[EUR][1000 genomes]
rs73151530	1.00[EUR][1000 genomes]
rs73151532	1.00[EUR][1000 genomes]
rs73151542	1.00[EUR][1000 genomes]
rs73152804	1.00[EUR][1000 genomes]
rs73152806	1.00[EUR][1000 genomes]
rs73152810	1.00[EUR][1000 genomes]
rs73152812	1.00[EUR][1000 genomes]
rs73152815	1.00[EUR][1000 genomes]
rs73152816	1.00[EUR][1000 genomes]
rs73152823	1.00[EUR][1000 genomes]
rs73152825	1.00[EUR][1000 genomes]
rs73152826	1.00[EUR][1000 genomes]
rs73152828	1.00[EUR][1000 genomes]
rs73153610	1.00[EUR][1000 genomes]
rs73153611	1.00[EUR][1000 genomes]
rs73153664	1.00[EUR][1000 genomes]
rs73154758	1.00[EUR][1000 genomes]
rs73154759	1.00[EUR][1000 genomes]
rs73154761	1.00[EUR][1000 genomes]
rs73154763	1.00[EUR][1000 genomes]
rs73154764	1.00[EUR][1000 genomes]
rs73154766	1.00[EUR][1000 genomes]
rs73155673	1.00[EUR][1000 genomes]
rs73155682	1.00[EUR][1000 genomes]
rs73155684	1.00[EUR][1000 genomes]
rs73155691	1.00[EUR][1000 genomes]
rs73158069	1.00[EUR][1000 genomes]
rs7706505	1.00[EUR][1000 genomes]
rs7713150	1.00[EUR][1000 genomes]
rs7718954	1.00[EUR][1000 genomes]
rs7725027	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031945	chr5:98976665-99503539	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv521463	chr5:99074392-99539933	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2758006	chr5:99207674-99846255	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	esv2759359	chr5:99207674-99883371	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv882438	chr5:99279767-99600237	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv1805126	chr5:99298081-99476578	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv830424	chr5:99298081-99476578	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv428118	chr5:99298081-99476578	Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv1792320	chr5:99298081-99509439	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv432783	chr5:99304875-99536420	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv882440	chr5:99332696-99468680	Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv882441	chr5:99362737-99465252	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv882442	chr5:99362737-99478428	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
14	esv34624	chr5:99383469-99664527	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	esv1795030	chr5:99385971-99509439	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	esv1808351	chr5:99385971-99509439	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
17	esv1807423	chr5:99385971-99635944	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
18	nsv882443	chr5:99398570-99518198	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv968106	chr5:99414325-99549735	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv882444	chr5:99420600-99549149	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv2757124	chr5:99424756-99883371	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
22	nsv1032625	chr5:99425442-99664628	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv1020130	chr5:99428583-99683405	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv471632	chr5:99429213-99601670	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
25	nsv1021521	chr5:99432203-99483688	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv882445	chr5:99434080-99518198	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	nsv882446	chr5:99434080-99728990	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
28	nsv882447	chr5:99438989-99518198	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	nsv882448	chr5:99438989-99524263	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	nsv882449	chr5:99438989-99533649	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
31	nsv882450	chr5:99438989-99549149	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
32	nsv882451	chr5:99438989-99582020	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
33	nsv882452	chr5:99438989-99669656	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
34	nsv1027734	chr5:99439983-99492104	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
35	nsv1032461	chr5:99445834-99548178	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
36	nsv1020688	chr5:99445834-99554401	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
37	nsv599163	chr5:99446039-99539933	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
38	nsv1015909	chr5:99446627-99566778	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
39	nsv1031968	chr5:99446627-99610086	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
40	nsv1034711	chr5:99446627-99662421	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
41	nsv599164	chr5:99458306-99539933	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
42	nsv523868	chr5:99458306-99665423	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:99461400-99464000	Weak transcription	Fetal Kidney	kidney

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