Variant report

Variant	rs73155691
Chromosome Location	chr5:99388832-99388833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB33	chr5:99388475-99388866	GM12878	blood:	n/a	n/a
2	FOSL2	chr5:99388467-99389384	HepG2	liver:	n/a	chr5:99389101-99389109

Variant related genes	Relation type
MTND5P10	TF binding region
ENSG00000271480	TF binding region
ENSG00000270388	TF binding region
MTATP6P2	TF binding region
ENSG00000270350	TF binding region
ENSG00000270906	TF binding region

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1161321	1.00[EUR][1000 genomes]
rs11949528	1.00[EUR][1000 genomes]
rs11950235	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11952192	1.00[EUR][1000 genomes]
rs11952199	1.00[EUR][1000 genomes]
rs11952934	1.00[EUR][1000 genomes]
rs12109233	1.00[EUR][1000 genomes]
rs12109763	1.00[EUR][1000 genomes]
rs12109854	1.00[EUR][1000 genomes]
rs12110159	1.00[EUR][1000 genomes]
rs17161451	1.00[EUR][1000 genomes]
rs2616322	1.00[EUR][1000 genomes]
rs59771332	1.00[EUR][1000 genomes]
rs60398983	1.00[EUR][1000 genomes]
rs73148755	1.00[EUR][1000 genomes]
rs73148760	1.00[EUR][1000 genomes]
rs73148763	1.00[EUR][1000 genomes]
rs73148764	1.00[EUR][1000 genomes]
rs73149889	1.00[EUR][1000 genomes]
rs73149891	1.00[EUR][1000 genomes]
rs73150910	1.00[EUR][1000 genomes]
rs73150913	1.00[EUR][1000 genomes]
rs73150915	1.00[EUR][1000 genomes]
rs73150959	1.00[EUR][1000 genomes]
rs73150961	1.00[EUR][1000 genomes]
rs73150997	1.00[EUR][1000 genomes]
rs73150999	1.00[EUR][1000 genomes]
rs73151000	1.00[EUR][1000 genomes]
rs73151001	1.00[EUR][1000 genomes]
rs73152804	1.00[EUR][1000 genomes]
rs73152806	1.00[EUR][1000 genomes]
rs73152810	1.00[EUR][1000 genomes]
rs73152812	1.00[EUR][1000 genomes]
rs73152815	1.00[EUR][1000 genomes]
rs73152816	1.00[EUR][1000 genomes]
rs73152823	1.00[EUR][1000 genomes]
rs73152825	1.00[EUR][1000 genomes]
rs73152826	1.00[EUR][1000 genomes]
rs73152828	1.00[EUR][1000 genomes]
rs73153610	1.00[EUR][1000 genomes]
rs73153611	1.00[EUR][1000 genomes]
rs73153664	1.00[EUR][1000 genomes]
rs73154758	1.00[EUR][1000 genomes]
rs73154759	1.00[EUR][1000 genomes]
rs73154761	1.00[EUR][1000 genomes]
rs73154763	1.00[EUR][1000 genomes]
rs73154764	1.00[EUR][1000 genomes]
rs73154766	1.00[EUR][1000 genomes]
rs73155673	1.00[EUR][1000 genomes]
rs73155682	1.00[EUR][1000 genomes]
rs73155684	1.00[EUR][1000 genomes]
rs73158069	1.00[EUR][1000 genomes]
rs7706505	1.00[EUR][1000 genomes]
rs7713150	1.00[EUR][1000 genomes]
rs7725027	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3509855	chr5:98919847-99394935	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3509856	chr5:98919847-99394935	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1031945	chr5:98976665-99503539	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv521463	chr5:99074392-99539933	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	esv2758006	chr5:99207674-99846255	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv2759359	chr5:99207674-99883371	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	nsv882438	chr5:99279767-99600237	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	esv1805126	chr5:99298081-99476578	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv830424	chr5:99298081-99476578	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv428118	chr5:99298081-99476578	Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	esv1792320	chr5:99298081-99509439	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv432782	chr5:99304875-99446176	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv432783	chr5:99304875-99536420	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv432784	chr5:99317040-99446176	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv1031008	chr5:99317040-99448356	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
16	nsv1025183	chr5:99322292-99395055	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv1023043	chr5:99322292-99446176	ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv1031609	chr5:99322292-99446756	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
19	nsv1026906	chr5:99322292-99448356	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
20	esv33013	chr5:99322707-99445769	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
21	nsv599160	chr5:99324810-99390727	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
22	nsv599161	chr5:99325303-99420600	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
23	nsv882440	chr5:99332696-99468680	Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv882441	chr5:99362737-99465252	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
25	nsv882442	chr5:99362737-99478428	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
26	nsv10729	chr5:99380706-99392925	Inactive region	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
27	esv12087	chr5:99380988-99391856	Inactive region	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
28	nsv823155	chr5:99380988-99391856	Inactive region	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
29	nsv968968	chr5:99381150-99390564	Inactive region	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
30	nsv823156	chr5:99381712-99390413	Inactive region	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
31	nsv819839	chr5:99381741-99390460	Inactive region	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
32	esv1794679	chr5:99381759-99390601	Inactive region	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
33	esv1851209	chr5:99381759-99390601	Inactive region	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
34	nsv823157	chr5:99382369-99390413	Inactive region	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
35	esv34624	chr5:99383469-99664527	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
36	esv1795030	chr5:99385971-99509439	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
37	esv1808351	chr5:99385971-99509439	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
38	esv1807423	chr5:99385971-99635944	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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