Variant report

Variant	rs73149797
Chromosome Location	chr4:56259657-56259658
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr4:56259586-56260134	MCF-7	breast:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:56257950..56259802-chr4:56266397..56269452,3	K562	blood:
2	chr4:56222050..56228109-chr4:56258616..56264786,10	MCF-7	breast:
3	chr4:56211148..56230966-chr4:56256626..56269458,54	MCF-7	breast:
4	chr4:56211096..56216124-chr4:56256262..56265067,20	K562	blood:
5	chr4:56211242..56218739-chr4:56258356..56267013,28	MCF-7	breast:
6	chr4:56211281..56215987-chr4:56257992..56268538,18	K562	blood:
7	chr4:56240281..56248484-chr4:56258541..56264383,10	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CLOCK-1	chr4:56259584-56259882	ENSG00000249700.4

No data

Variant related genes	Relation type
TMEM165	TF binding region
ENSG00000128039	Chromatin interaction
ENSG00000251111	Chromatin interaction
ENSG00000249700	Chromatin interaction
ENSG00000134851	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs73147878	1.00[AMR][1000 genomes]
rs73149362	1.00[AMR][1000 genomes]
rs73149762	1.00[AMR][1000 genomes]
rs73149770	1.00[AMR][1000 genomes]
rs73149795	1.00[AMR][1000 genomes]
rs73149801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151846	1.00[AMR][1000 genomes]
rs73151855	1.00[AMR][1000 genomes]
rs73151862	1.00[AMR][1000 genomes]
rs73151884	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv999477	chr4:56219035-56397180	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv537101	chr4:56219035-56397180	Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56233200-56261600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:56248200-56261400	Weak transcription	Aorta	Aorta
3	chr4:56249200-56261200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:56252400-56261600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:56254000-56261400	Weak transcription	Fetal Thymus	thymus
6	chr4:56256000-56261200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:56256400-56261400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:56257600-56261400	Weak transcription	Pancreas	Pancrea
9	chr4:56257800-56261200	Weak transcription	Fetal Intestine Small	intestine
10	chr4:56259200-56261200	Enhancers	Brain Anterior Caudate	brain
11	chr4:56259400-56259800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr4:56259400-56259800	Enhancers	Lung	lung
13	chr4:56259400-56260200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:56259400-56260200	Enhancers	Brain Angular Gyrus	brain
15	chr4:56259400-56260200	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr4:56259400-56260400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:56259400-56260400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:56259400-56260800	Enhancers	Brain Substantia Nigra	brain
19	chr4:56259400-56261000	Enhancers	K562	blood
20	chr4:56259400-56261200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:56259400-56261200	Enhancers	Brain Hippocampus Middle	brain
22	chr4:56259400-56261400	Enhancers	Brain Cingulate Gyrus	brain
23	chr4:56259400-56261600	Enhancers	Stomach Mucosa	stomach
24	chr4:56259600-56259800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:56259600-56260000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr4:56259600-56260000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:56259600-56260000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:56259600-56260000	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr4:56259600-56260000	Enhancers	NHDF-Ad	bronchial
30	chr4:56259600-56260200	Enhancers	Muscle Satellite Cultured Cells	--
31	chr4:56259600-56260200	Enhancers	NHLF	lung
32	chr4:56259600-56261200	Enhancers	HepG2	liver
33	chr4:56259600-56261400	Enhancers	A549	lung

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