Variant report

Variant	rs73151862
Chromosome Location	chr4:56302092-56302093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56211315..56214213-chr4:56299558..56303630,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128039	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs73147878	1.00[AMR][1000 genomes]
rs73149362	1.00[AMR][1000 genomes]
rs73149762	1.00[AMR][1000 genomes]
rs73149770	1.00[AMR][1000 genomes]
rs73149795	1.00[AMR][1000 genomes]
rs73149797	1.00[AMR][1000 genomes]
rs73149801	1.00[AMR][1000 genomes]
rs73151846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151884	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv999477	chr4:56219035-56397180	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv537101	chr4:56219035-56397180	Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv1011722	chr4:56261349-56325600	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56265600-56319800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:56268800-56326000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:56269000-56311400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr4:56274600-56332200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:56275800-56302200	Strong transcription	Fetal Thymus	thymus
6	chr4:56276000-56302400	Strong transcription	Dnd41	blood
7	chr4:56276000-56320000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:56276200-56304400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:56276200-56310000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:56276600-56303400	Strong transcription	Osteobl	bone
11	chr4:56276600-56305000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr4:56277400-56302400	Strong transcription	HSMM	muscle
13	chr4:56277400-56306000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:56277600-56305000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:56277800-56302200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:56279000-56321800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:56280000-56304800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:56280600-56302200	Strong transcription	Primary B cells from cord blood	blood
19	chr4:56280600-56303400	Strong transcription	Duodenum Mucosa	Duodenum
20	chr4:56280600-56305000	Strong transcription	Placenta	Placenta
21	chr4:56280600-56305200	Strong transcription	Adipose Nuclei	Adipose
22	chr4:56280800-56304800	Strong transcription	Primary B cells from peripheral blood	blood
23	chr4:56280800-56311000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:56281000-56302200	Strong transcription	NH-A	brain
25	chr4:56281000-56303200	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr4:56281600-56303600	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr4:56281600-56304600	Strong transcription	Liver	Liver
28	chr4:56285800-56304600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:56287000-56304600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:56288400-56318400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr4:56289400-56304600	Strong transcription	HMEC	breast
32	chr4:56290400-56304600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr4:56290800-56304400	Weak transcription	Colonic Mucosa	Colon
34	chr4:56290800-56340400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr4:56290800-56340600	Weak transcription	Thymus	Thymus
36	chr4:56291400-56304400	Strong transcription	NHDF-Ad	bronchial
37	chr4:56291400-56308600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:56293000-56302200	Strong transcription	Brain Anterior Caudate	brain
39	chr4:56293000-56303400	Weak transcription	Stomach Mucosa	stomach
40	chr4:56293000-56324800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr4:56293000-56354800	Weak transcription	Aorta	Aorta
42	chr4:56294000-56303800	Weak transcription	Lung	lung
43	chr4:56294000-56311400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr4:56294000-56341200	Weak transcription	Small Intestine	intestine
45	chr4:56295000-56302800	Strong transcription	Fetal Intestine Large	intestine
46	chr4:56295400-56304600	Strong transcription	Fetal Muscle Trunk	muscle
47	chr4:56296200-56314600	Weak transcription	Psoas Muscle	Psoas
48	chr4:56296200-56314600	Weak transcription	Hela-S3	cervix
49	chr4:56297200-56302200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr4:56297200-56304800	Strong transcription	Muscle Satellite Cultured Cells	--

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