Variant report

Variant	rs73153218
Chromosome Location	chr3:89619808-89619809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1080592	0.83[EUR][1000 genomes]
rs12629758	0.82[EUR][1000 genomes]
rs12633325	0.83[EUR][1000 genomes]
rs17026990	0.82[EUR][1000 genomes]
rs2048518	0.80[EUR][1000 genomes]
rs2048519	0.81[EUR][1000 genomes]
rs2048520	0.81[EUR][1000 genomes]
rs2048521	0.81[EUR][1000 genomes]
rs2069183	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73144998	0.82[EUR][1000 genomes]
rs73145303	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73145304	0.84[EUR][1000 genomes]
rs73145305	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73145307	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73145309	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73145310	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73145312	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73145316	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73145345	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145353	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145357	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73146907	0.82[EUR][1000 genomes]
rs73146968	0.81[EUR][1000 genomes]
rs73146970	0.82[EUR][1000 genomes]
rs73146972	0.82[EUR][1000 genomes]
rs73149109	0.83[EUR][1000 genomes]
rs73149113	0.83[EUR][1000 genomes]
rs819293	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs907548	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs972030	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008018	chr3:89382031-90254063	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv536639	chr3:89382031-90254063	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1010932	chr3:89424428-90192503	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv590952	chr3:89493167-89727198	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1010021	chr3:89521983-90141988	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv530024	chr3:89548440-90304841	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv428743	chr3:89584946-89689096	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89618000-89621200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:89618200-89620400	Weak transcription	Spleen	Spleen
3	chr3:89619400-89620200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:89619400-89620200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr3:89619600-89620000	Enhancers	Psoas Muscle	Psoas
6	chr3:89619600-89620200	Enhancers	Brain Hippocampus Middle	brain
7	chr3:89619600-89620400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr3:89619600-89620400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr3:89619600-89620800	Enhancers	Stomach Smooth Muscle	stomach
10	chr3:89619600-89621200	Enhancers	Brain Cingulate Gyrus	brain
11	chr3:89619600-89621200	Enhancers	Fetal Muscle Leg	muscle
12	chr3:89619600-89621400	Enhancers	Brain Angular Gyrus	brain
13	chr3:89619600-89621400	Enhancers	Ovary	ovary
14	chr3:89619800-89620200	Enhancers	Brain Substantia Nigra	brain
15	chr3:89619800-89621400	Enhancers	Fetal Muscle Trunk	muscle

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