Variant report

Variant	rs73155829
Chromosome Location	chr7:150176977-150176978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150168756..150171646-chr7:150175506..150177582,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1113485	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11769211	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1608627	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2140595	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2373748	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2373749	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56693569	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58111571	0.91[EUR][1000 genomes]
rs59777480	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60114833	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61342202	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6464067	0.94[EUR][1000 genomes]
rs6947973	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6969414	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73155823	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7789541	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv1025129	chr7:150146593-150266217	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1031309	chr7:150171651-150222230	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs73155829	GIMAP8	cis	Skin Sun Exposed Lower leg	GTEx
rs73155829	GIMAP8	cis	Muscle Skeletal	GTEx
rs73155829	GIMAP8	cis	Nerve Tibial	GTEx
rs73155829	GIMAP8	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150161200-150178400	Weak transcription	Esophagus	oesophagus
2	chr7:150164400-150178000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:150165600-150179200	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:150166600-150178800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:150166600-150179200	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:150168000-150177400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:150169600-150177600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr7:150172800-150178000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:150172800-150178600	Weak transcription	GM12878-XiMat	blood
10	chr7:150174000-150178400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr7:150174200-150177600	Genic enhancers	Primary monocytes fromperipheralblood	blood
12	chr7:150174600-150177200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr7:150174800-150177400	Genic enhancers	Monocytes-CD14+_RO01746	blood
14	chr7:150175000-150178400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr7:150175200-150177400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:150175200-150177400	Enhancers	HMEC	breast
17	chr7:150175200-150178000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr7:150175200-150178400	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr7:150175200-150180400	Enhancers	Adipose Nuclei	Adipose
20	chr7:150175400-150177400	Enhancers	NHEK	skin
21	chr7:150175400-150177600	Enhancers	Left Ventricle	heart
22	chr7:150175600-150177200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr7:150175600-150177600	Strong transcription	HUVEC	blood vessel
24	chr7:150175600-150178600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr7:150175800-150177000	Enhancers	Primary T cells fromperipheralblood	blood
26	chr7:150175800-150177000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:150175800-150177200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:150176000-150177000	Enhancers	Fetal Heart	heart
29	chr7:150176000-150178000	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr7:150176000-150178400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr7:150176000-150178400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr7:150176000-150180000	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr7:150176400-150178200	Enhancers	Primary T cells from cord blood	blood
34	chr7:150176600-150177400	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr7:150176600-150177400	Enhancers	Right Atrium	heart
36	chr7:150176600-150178000	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr7:150176600-150179400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:150176600-150180400	Enhancers	Fetal Thymus	thymus
39	chr7:150176800-150177000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr7:150176800-150177000	Enhancers	Liver	Liver
41	chr7:150176800-150177200	Weak transcription	Primary B cells from cord blood	blood
42	chr7:150176800-150177400	Enhancers	Lung	lung
43	chr7:150176800-150177400	Genic enhancers	Spleen	Spleen
44	chr7:150176800-150178800	Enhancers	Right Ventricle	heart
45	chr7:150176800-150179600	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr7:150176800-150180200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr7:150176800-150180400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links