Variant report

Variant	rs7789541
Chromosome Location	chr7:150177295-150177296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150168756..150171646-chr7:150175506..150177582,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73155829	0.80[EUR][1000 genomes]
rs7776515	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv1025129	chr7:150146593-150266217	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1031309	chr7:150171651-150222230	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7789541	GIMAP8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150161200-150178400	Weak transcription	Esophagus	oesophagus
2	chr7:150164400-150178000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:150165600-150179200	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:150166600-150178800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:150166600-150179200	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:150168000-150177400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:150169600-150177600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr7:150172800-150178000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:150172800-150178600	Weak transcription	GM12878-XiMat	blood
10	chr7:150174000-150178400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr7:150174200-150177600	Genic enhancers	Primary monocytes fromperipheralblood	blood
12	chr7:150174800-150177400	Genic enhancers	Monocytes-CD14+_RO01746	blood
13	chr7:150175000-150178400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr7:150175200-150177400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:150175200-150177400	Enhancers	HMEC	breast
16	chr7:150175200-150178000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr7:150175200-150178400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr7:150175200-150180400	Enhancers	Adipose Nuclei	Adipose
19	chr7:150175400-150177400	Enhancers	NHEK	skin
20	chr7:150175400-150177600	Enhancers	Left Ventricle	heart
21	chr7:150175600-150177600	Strong transcription	HUVEC	blood vessel
22	chr7:150175600-150178600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr7:150176000-150178000	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr7:150176000-150178400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr7:150176000-150178400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr7:150176000-150180000	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr7:150176400-150178200	Enhancers	Primary T cells from cord blood	blood
28	chr7:150176600-150177400	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:150176600-150177400	Enhancers	Right Atrium	heart
30	chr7:150176600-150178000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr7:150176600-150179400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:150176600-150180400	Enhancers	Fetal Thymus	thymus
33	chr7:150176800-150177400	Enhancers	Lung	lung
34	chr7:150176800-150177400	Genic enhancers	Spleen	Spleen
35	chr7:150176800-150178800	Enhancers	Right Ventricle	heart
36	chr7:150176800-150179600	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr7:150176800-150180200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:150176800-150180400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr7:150177000-150180200	Weak transcription	Liver	Liver
40	chr7:150177200-150177400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr7:150177200-150178000	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr7:150177200-150178400	Enhancers	Primary T cells fromperipheralblood	blood
43	chr7:150177200-150180400	Enhancers	Primary hematopoietic stem cells	blood
44	chr7:150177200-150180800	Enhancers	Primary B cells from cord blood	blood

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