Variant report

Variant	rs73158551
Chromosome Location	chr3:157229432-157229433
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:157223317..157224859-chr3:157228100..157229982,2	K562	blood:
2	chr3:157223317..157227041-chr3:157227712..157230703,3	K562	blood:
3	chr3:157229203..157232317-chr3:157238088..157239944,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11508696	0.92[EUR][1000 genomes]
rs1596343	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1596346	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1596347	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1596348	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16827846	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17406704	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1822395	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1822397	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1838140	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2218357	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4299437	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56978441	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57302345	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57402090	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58228461	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60053317	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60056712	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66492295	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66507550	0.82[EUR][1000 genomes]
rs66590639	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66677173	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66748594	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66920133	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67109050	0.93[EUR][1000 genomes]
rs67214719	0.82[EUR][1000 genomes]
rs67317271	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67342635	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67400547	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67679572	0.80[EUR][1000 genomes]
rs67835528	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67962803	0.91[EUR][1000 genomes]
rs67990725	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs68073943	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73015531	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73158534	1.00[AFR][1000 genomes]
rs73158545	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73158547	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73158549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73158550	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73158557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73158575	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73158591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73160604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73160606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73160607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73160608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73160612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7649021	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157217800-157235400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:157221800-157244800	Weak transcription	NH-A	brain
3	chr3:157222600-157241800	Weak transcription	HSMM	muscle
4	chr3:157223200-157239000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:157226600-157229800	Weak transcription	K562	blood
6	chr3:157227400-157241600	Weak transcription	Osteobl	bone
7	chr3:157228000-157230200	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links