Variant report

Variant	rs73163244
Chromosome Location	chr7:140099341-140099342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140097102..140100754-chr7:140100879..140105218,4	MCF-7	breast:
2	chr7:140096834..140099391-chr7:140178947..140180902,2	K562	blood:
3	chr7:140075069..140077735-chr7:140096588..140099526,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157800	Chromatin interaction
ENSG00000133606	Chromatin interaction
ENSG00000146955	Chromatin interaction
ENSG00000238868	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73163252	1.00[ASN][1000 genomes]
rs73163257	1.00[ASN][1000 genomes]
rs73163266	1.00[ASN][1000 genomes]
rs73163274	1.00[ASN][1000 genomes]
rs73163296	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022919	chr7:140043299-140120546	Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2762706	chr7:140054170-140119629	Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv522190	chr7:140066411-140130663	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140098000-140103800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:140098400-140103400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:140098400-140103600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:140098400-140103600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:140098400-140103600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:140098400-140103600	Weak transcription	Small Intestine	intestine
7	chr7:140098400-140103600	Weak transcription	Spleen	Spleen
8	chr7:140098600-140100600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr7:140098600-140101400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr7:140098600-140101600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:140098600-140102000	Weak transcription	Primary T cells from cord blood	blood
12	chr7:140098600-140102200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:140098600-140102200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:140098600-140102200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:140098600-140103200	Weak transcription	Fetal Intestine Large	intestine
16	chr7:140098600-140103400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:140098600-140103400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:140098600-140103400	Weak transcription	Thymus	Thymus
19	chr7:140098600-140103600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:140098600-140103600	Weak transcription	Liver	Liver
21	chr7:140098600-140103600	Weak transcription	Placenta	Placenta
22	chr7:140098600-140103600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:140098800-140099800	Weak transcription	HUVEC	blood vessel
24	chr7:140098800-140101400	Weak transcription	K562	blood
25	chr7:140098800-140101600	Weak transcription	Hela-S3	cervix
26	chr7:140098800-140101800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr7:140098800-140102200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:140098800-140103000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr7:140098800-140103000	Weak transcription	Fetal Thymus	thymus
30	chr7:140098800-140103000	Weak transcription	HepG2	liver
31	chr7:140098800-140103200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr7:140098800-140103200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:140098800-140103200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:140098800-140103200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr7:140098800-140103200	Weak transcription	Fetal Intestine Small	intestine
36	chr7:140098800-140103400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr7:140098800-140103400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr7:140098800-140103400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr7:140098800-140103400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr7:140098800-140103400	Weak transcription	HMEC	breast
41	chr7:140098800-140103400	Weak transcription	NHEK	skin
42	chr7:140098800-140103600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr7:140098800-140103600	Weak transcription	Brain Angular Gyrus	brain
44	chr7:140098800-140103600	Weak transcription	Lung	lung
45	chr7:140099000-140101600	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr7:140099000-140101800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr7:140099000-140102000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr7:140099000-140102000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr7:140099000-140102600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr7:140099000-140103400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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