Variant report

Variant	rs73163257
Chromosome Location	chr7:140109870-140109871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73163244	1.00[ASN][1000 genomes]
rs73163252	1.00[ASN][1000 genomes]
rs73163266	1.00[ASN][1000 genomes]
rs73163274	1.00[ASN][1000 genomes]
rs73163296	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022919	chr7:140043299-140120546	Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2762706	chr7:140054170-140119629	Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv522190	chr7:140066411-140130663	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140104200-140110200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr7:140104200-140125800	Weak transcription	Right Atrium	heart
3	chr7:140104200-140133400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:140104400-140117800	Weak transcription	Colonic Mucosa	Colon
5	chr7:140104600-140111400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:140104600-140113800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:140104600-140117000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:140104600-140117400	Weak transcription	Primary B cells from cord blood	blood
9	chr7:140104600-140127800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:140104800-140110000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr7:140104800-140111400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr7:140104800-140111400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:140104800-140111600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:140104800-140112600	Weak transcription	Fetal Intestine Small	intestine
15	chr7:140104800-140113400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:140104800-140116400	Weak transcription	Thymus	Thymus
17	chr7:140104800-140116600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:140104800-140117200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr7:140104800-140117400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr7:140104800-140125600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr7:140104800-140125600	Weak transcription	Gastric	stomach
22	chr7:140104800-140125800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr7:140104800-140126000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:140104800-140126000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr7:140104800-140128200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr7:140104800-140129000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr7:140105000-140112800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr7:140105000-140113200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr7:140105000-140119000	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr7:140105000-140126600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr7:140105000-140128200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr7:140105000-140132400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:140105400-140111000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:140106800-140117600	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr7:140107200-140113600	Weak transcription	Lung	lung
36	chr7:140107400-140111600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:140107400-140116400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr7:140107600-140112600	Weak transcription	Pancreas	Pancrea
39	chr7:140107600-140116400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr7:140108800-140111400	Weak transcription	Primary T cells from cord blood	blood

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