Variant report

Variant	rs73163465
Chromosome Location	chr13:30798163-30798164
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30796105..30798319-chr13:30802158..30804551,2	MCF-7	breast:
2	chr13:30796832..30799585-chr13:30801538..30805408,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17632920	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17689474	0.91[AFR][1000 genomes]
rs2277450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163467	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163468	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163469	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163472	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7999644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30754000-30798800	Weak transcription	Brain Anterior Caudate	brain
2	chr13:30765600-30807000	Weak transcription	Gastric	stomach
3	chr13:30766400-30804400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr13:30768600-30798800	Weak transcription	HMEC	breast
5	chr13:30770000-30799200	Weak transcription	HSMMtube	muscle
6	chr13:30770600-30803200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr13:30774400-30812600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr13:30774600-30802800	Weak transcription	Lung	lung
9	chr13:30774600-30805200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:30775000-30803000	Weak transcription	Esophagus	oesophagus
11	chr13:30777200-30799000	Weak transcription	Brain Angular Gyrus	brain
12	chr13:30780200-30801000	Weak transcription	Pancreas	Pancrea
13	chr13:30782600-30798400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr13:30783200-30799000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr13:30790000-30807000	Weak transcription	Small Intestine	intestine
16	chr13:30790800-30799000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr13:30791000-30798400	Weak transcription	Right Ventricle	heart
18	chr13:30791000-30799000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr13:30791000-30799000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr13:30791000-30799000	Weak transcription	Aorta	Aorta
21	chr13:30791000-30799000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr13:30791000-30802600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr13:30791000-30802600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr13:30791000-30807200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr13:30791000-30808800	Weak transcription	Brain Hippocampus Middle	brain
26	chr13:30791000-30811600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr13:30791000-30831400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr13:30791200-30798800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr13:30792400-30802600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr13:30794000-30801200	Weak transcription	Colon Smooth Muscle	Colon
31	chr13:30795000-30800000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr13:30795400-30799000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr13:30795800-30798800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr13:30795800-30798800	ZNF genes & repeats	Fetal Thymus	thymus
35	chr13:30795800-30805600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr13:30796200-30798800	Strong transcription	Fetal Lung	lung
37	chr13:30796200-30799400	ZNF genes & repeats	Primary B cells from cord blood	blood
38	chr13:30796200-30799600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
39	chr13:30796200-30799600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr13:30796200-30800400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr13:30796400-30799800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
42	chr13:30796400-30800000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr13:30796400-30801600	ZNF genes & repeats	Dnd41	blood
44	chr13:30796600-30798800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr13:30796600-30799000	Weak transcription	Ovary	ovary
46	chr13:30796600-30799200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr13:30796600-30799400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr13:30796600-30800000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
49	chr13:30796600-30800400	ZNF genes & repeats	Fetal Brain Female	brain
50	chr13:30796600-30807000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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