Variant report

Variant	rs7316545
Chromosome Location	chr12:119330039-119330040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10851046	0.96[CEU][hapmap]
rs10851047	0.96[CEU][hapmap]
rs11069146	0.96[CEU][hapmap]
rs12424805	0.86[EUR][1000 genomes]
rs2730433	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7315520	0.96[CEU][hapmap]
rs7315931	0.96[CEU][hapmap]
rs7966225	0.96[CEU][hapmap]
rs7978942	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7979275	0.96[CEU][hapmap]
rs7979278	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7979677	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv20139	chr12:119328798-119332851	Inactive region	lncRNA	n/a	inside rSNPs	diseases
3	nsv560393	chr12:119328906-119332931	Inactive region	lncRNA	n/a	inside rSNPs	diseases
4	nsv560394	chr12:119328906-119334779	Inactive region	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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