Variant report

Variant	rs73166492
Chromosome Location	chr13:29797744-29797745
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11147367	0.93[ASN][1000 genomes]
rs11147371	0.98[ASN][1000 genomes]
rs11617349	0.97[ASN][1000 genomes]
rs11617704	0.88[ASN][1000 genomes]
rs11617962	0.88[ASN][1000 genomes]
rs11618881	0.98[ASN][1000 genomes]
rs11619729	0.98[ASN][1000 genomes]
rs12586107	1.00[ASN][1000 genomes]
rs12858732	0.89[ASN][1000 genomes]
rs12866752	0.89[ASN][1000 genomes]
rs12868391	0.88[ASN][1000 genomes]
rs12877143	0.88[ASN][1000 genomes]
rs2104658	0.95[ASN][1000 genomes]
rs34231979	1.00[ASN][1000 genomes]
rs34642107	1.00[ASN][1000 genomes]
rs35117092	0.96[ASN][1000 genomes]
rs35248184	0.97[ASN][1000 genomes]
rs35251425	0.88[ASN][1000 genomes]
rs35852257	0.93[ASN][1000 genomes]
rs73166467	0.94[ASN][1000 genomes]
rs73166469	0.94[ASN][1000 genomes]
rs73166476	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7328324	0.88[ASN][1000 genomes]
rs914261	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv899957	chr13:29720732-29820422	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv427927	chr13:29729315-30062054	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv899958	chr13:29752497-29820422	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv899959	chr13:29752497-29832613	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv976	chr13:29759458-29804146	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3433497	chr13:29786122-29917797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv3347671	chr13:29786276-29922806	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv3371345	chr13:29786316-29922762	Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29796600-29798200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:29796600-29798400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:29796800-29798400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr13:29796800-29798400	ZNF genes & repeats	Dnd41	blood
5	chr13:29797000-29797800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr13:29797000-29798400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
7	chr13:29797200-29798200	ZNF genes & repeats	Liver	Liver
8	chr13:29797200-29798200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
9	chr13:29797400-29798200	ZNF genes & repeats	Brain Anterior Caudate	brain
10	chr13:29797400-29798400	ZNF genes & repeats	Aorta	Aorta
11	chr13:29797600-29798000	Active TSS	Colon Smooth Muscle	Colon
12	chr13:29797600-29798200	ZNF genes & repeats	Fetal Heart	heart
13	chr13:29797600-29798200	ZNF genes & repeats	Fetal Stomach	stomach

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