Variant report

Variant	rs73172127
Chromosome Location	chr3:158189286-158189287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs1038885	0.91[AFR][1000 genomes]
rs10513526	0.87[EUR][1000 genomes]
rs10936130	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12486595	0.92[AMR][1000 genomes]
rs12487397	0.85[EUR][1000 genomes]
rs12487873	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12487933	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12490116	0.85[EUR][1000 genomes]
rs12491983	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12493633	0.85[EUR][1000 genomes]
rs12493753	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12496739	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12497109	0.85[EUR][1000 genomes]
rs12497273	0.85[EUR][1000 genomes]
rs12631828	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12631832	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12634372	0.84[EUR][1000 genomes]
rs12634405	0.85[EUR][1000 genomes]
rs12634483	0.83[EUR][1000 genomes]
rs12634966	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12635395	0.87[EUR][1000 genomes]
rs12635963	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12637243	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12637436	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12638258	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1435638	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1435639	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16829072	0.92[AMR][1000 genomes]
rs16829079	0.92[AMR][1000 genomes]
rs16829116	0.82[AMR][1000 genomes]
rs17486183	0.87[EUR][1000 genomes]
rs17627838	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17630223	0.91[AFR][1000 genomes]
rs17630394	0.91[AFR][1000 genomes]
rs17631016	0.91[AFR][1000 genomes]
rs17683721	0.85[EUR][1000 genomes]
rs17683787	0.85[EUR][1000 genomes]
rs2140982	0.87[EUR][1000 genomes]
rs2291594	0.91[AFR][1000 genomes]
rs2363654	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2363657	0.92[AMR][1000 genomes]
rs28491830	0.83[AMR][1000 genomes]
rs28669117	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28781280	0.85[EUR][1000 genomes]
rs4021884	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4432589	0.87[EUR][1000 genomes]
rs4522814	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5025785	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55818809	0.85[EUR][1000 genomes]
rs56019559	0.87[EUR][1000 genomes]
rs56101139	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56130447	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56303915	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58034569	0.83[AMR][1000 genomes]
rs59112782	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59502510	0.90[AMR][1000 genomes]
rs59661293	0.87[EUR][1000 genomes]
rs60463398	0.87[EUR][1000 genomes]
rs60566034	0.87[EUR][1000 genomes]
rs60921365	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67074371	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6762774	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6769314	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770005	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6795710	0.92[AMR][1000 genomes]
rs6797871	0.90[AMR][1000 genomes]
rs6804401	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806720	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73020715	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73020720	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73022714	0.92[AMR][1000 genomes]
rs73022726	0.92[AMR][1000 genomes]
rs73022742	0.92[AMR][1000 genomes]
rs73166347	0.85[EUR][1000 genomes]
rs73166351	0.84[EUR][1000 genomes]
rs73166352	0.85[EUR][1000 genomes]
rs73166357	0.85[EUR][1000 genomes]
rs73166361	0.83[EUR][1000 genomes]
rs73166362	0.85[EUR][1000 genomes]
rs73166370	0.85[EUR][1000 genomes]
rs73166374	0.85[EUR][1000 genomes]
rs73166375	0.85[EUR][1000 genomes]
rs73166381	0.85[EUR][1000 genomes]
rs73166383	0.85[EUR][1000 genomes]
rs73166386	0.85[EUR][1000 genomes]
rs73166387	0.85[EUR][1000 genomes]
rs73166388	0.85[EUR][1000 genomes]
rs73166390	0.85[EUR][1000 genomes]
rs73166394	0.87[EUR][1000 genomes]
rs73166397	0.87[EUR][1000 genomes]
rs73166399	0.87[EUR][1000 genomes]
rs73168703	0.87[EUR][1000 genomes]
rs73168704	0.87[EUR][1000 genomes]
rs73168713	0.87[EUR][1000 genomes]
rs73168718	0.87[EUR][1000 genomes]
rs73168720	0.87[EUR][1000 genomes]
rs73168737	0.87[EUR][1000 genomes]
rs73170313	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73170316	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73170323	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73170340	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73170342	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73170344	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73170358	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73170365	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73170367	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73170369	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73170394	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73170401	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73172109	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73172118	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73172122	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73172146	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7619886	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7638518	0.83[AMR][1000 genomes]
rs7638606	0.80[AMR][1000 genomes]
rs7650062	0.85[EUR][1000 genomes]
rs939115	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs939116	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs951113	0.87[EUR][1000 genomes]
rs9681065	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9811282	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9812307	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815348	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9819130	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9830994	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9849688	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9854620	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9858498	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9861322	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1013046	chr3:158176582-158244606	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1014557	chr3:158176582-158251602	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv877690	chr3:158184263-158296916	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158188400-158190200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:158188600-158189400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:158188600-158189400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:158188600-158189400	Enhancers	NHLF	lung
5	chr3:158188600-158189800	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr3:158188600-158190400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:158188800-158189400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:158188800-158189400	Enhancers	Adipose Nuclei	Adipose
9	chr3:158188800-158189400	Enhancers	Fetal Lung	lung
10	chr3:158188800-158189800	Enhancers	Osteobl	bone
11	chr3:158188800-158190000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:158188800-158190400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:158189000-158189800	Enhancers	HepG2	liver
14	chr3:158189000-158190000	Weak transcription	Hela-S3	cervix
15	chr3:158189200-158189400	Flanking Active TSS	A549	lung
16	chr3:158189200-158189400	Flanking Active TSS	NHDF-Ad	bronchial
17	chr3:158189200-158189600	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr3:158189200-158189800	Enhancers	Liver	Liver
19	chr3:158189200-158190200	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links