Variant report

Variant	rs73172146
Chromosome Location	chr3:158205838-158205839
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:158193823..158196386-chr3:158204544..158206278,2	MCF-7	breast:
2	chr3:158199239..158201720-chr3:158204497..158206113,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12491983	0.81[EUR][1000 genomes]
rs12493753	0.81[EUR][1000 genomes]
rs12496739	0.85[EUR][1000 genomes]
rs12631828	0.83[EUR][1000 genomes]
rs12631832	0.85[EUR][1000 genomes]
rs12637243	0.85[EUR][1000 genomes]
rs12637436	0.85[EUR][1000 genomes]
rs17627838	0.81[EUR][1000 genomes]
rs2363654	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28669117	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5025785	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56130447	0.85[EUR][1000 genomes]
rs56303915	0.81[EUR][1000 genomes]
rs60463398	0.82[EUR][1000 genomes]
rs60921365	0.85[EUR][1000 genomes]
rs67074371	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6762774	0.86[EUR][1000 genomes]
rs6769314	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6804401	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73170394	0.81[EUR][1000 genomes]
rs73170401	0.81[EUR][1000 genomes]
rs73172109	0.81[EUR][1000 genomes]
rs73172118	0.85[EUR][1000 genomes]
rs73172122	0.85[EUR][1000 genomes]
rs73172127	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9812307	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9815348	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9854620	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1013046	chr3:158176582-158244606	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1014557	chr3:158176582-158251602	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv877690	chr3:158184263-158296916	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2763312	chr3:158193512-158420588	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158202200-158206400	Weak transcription	NHDF-Ad	bronchial
2	chr3:158202400-158206400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:158204800-158210200	Weak transcription	K562	blood
4	chr3:158205400-158206200	Weak transcription	Fetal Heart	heart

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