Variant report
| Variant | rs7317553 |
|---|---|
| Chromosome Location | chr13:62723856-62723857 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1394877 | 0.82[EUR][1000 genomes] |
| rs1394878 | 0.82[EUR][1000 genomes] |
| rs1394879 | 0.82[EUR][1000 genomes] |
| rs1553568 | 0.82[EUR][1000 genomes] |
| rs1553569 | 0.82[EUR][1000 genomes] |
| rs17210794 | 0.82[EUR][1000 genomes] |
| rs2121504 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2166602 | 0.82[EUR][1000 genomes] |
| rs67007906 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7317396 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7317740 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7318359 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7318734 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7331001 | 0.82[EUR][1000 genomes] |
| rs7335429 | 0.82[EUR][1000 genomes] |
| rs7984463 | 0.82[EUR][1000 genomes] |
| rs7988328 | 0.82[EUR][1000 genomes] |
| rs7988489 | 0.82[EUR][1000 genomes] |
| rs7988497 | 0.82[EUR][1000 genomes] |
| rs905905 | 0.82[EUR][1000 genomes] |
| rs9317219 | 0.82[EUR][1000 genomes] |
| rs9317220 | 0.82[EUR][1000 genomes] |
| rs9317221 | 0.82[EUR][1000 genomes] |
| rs9528466 | 0.82[EUR][1000 genomes] |
| rs9528473 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9539415 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948810 | chr13:62003256-62968196 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv832630 | chr13:62651865-62811428 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv974021 | chr13:62717340-62732532 | ZNF genes & repeats Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:62723600-62724400 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
