Variant report

Variant	rs1394878
Chromosome Location	chr13:62684359-62684360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11618499	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11840091	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1394877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1394879	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1505532	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1553568	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553569	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1587936	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1587937	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17210794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2121504	0.84[EUR][1000 genomes]
rs2166602	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886395	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67007906	0.83[EUR][1000 genomes]
rs7317396	0.83[EUR][1000 genomes]
rs7317553	0.82[EUR][1000 genomes]
rs7317740	0.82[EUR][1000 genomes]
rs7318359	0.84[EUR][1000 genomes]
rs7318734	0.84[EUR][1000 genomes]
rs73207754	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7331001	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7335429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7984463	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995850	0.82[ASN][1000 genomes]
rs905905	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9317218	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9317219	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9528466	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9528473	0.84[EUR][1000 genomes]
rs9539413	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9539414	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9539415	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv900252	chr13:62502166-62687843	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832630	chr13:62651865-62811428	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3378921	chr13:62684282-62684501	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62674600-62689400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:62684200-62684600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr13:62684200-62684800	Enhancers	HUES48 Cell Line	embryonic stem cell

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