Variant report

Variant	rs73177903
Chromosome Location	chr3:119791047-119791048
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:119790905..119792563-chr3:119799334..119801591,2	MCF-7	breast:
2	chr3:119790138..119793520-chr3:119812637..119815168,3	K562	blood:
3	chr3:119789871..119792489-chr3:119795247..119796872,2	K562	blood:
4	chr3:119790138..119791923-chr3:119812702..119815168,2	K562	blood:
5	chr3:119790797..119794267-chr3:119811448..119815142,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082701	Chromatin interaction
ENSG00000242622	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11918691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv3964	chr3:119786623-119831698	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119760200-119805400	Weak transcription	HMEC	breast
2	chr3:119764600-119812000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:119768800-119792800	Weak transcription	Fetal Stomach	stomach
4	chr3:119769200-119804400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:119771400-119809400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:119771800-119805400	Weak transcription	NHEK	skin
7	chr3:119773200-119807600	Weak transcription	Right Ventricle	heart
8	chr3:119775800-119796000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:119775800-119797600	Weak transcription	Fetal Thymus	thymus
10	chr3:119778800-119791200	Weak transcription	Fetal Brain Female	brain
11	chr3:119778800-119796000	Weak transcription	NHDF-Ad	bronchial
12	chr3:119778800-119796400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:119779400-119804200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:119779400-119807400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:119779600-119793000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:119779600-119800200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:119779600-119807800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr3:119779800-119793000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:119780600-119807800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr3:119784400-119796400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:119784400-119797200	Weak transcription	Thymus	Thymus
22	chr3:119785200-119792000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:119785400-119796800	Weak transcription	Dnd41	blood
24	chr3:119786600-119794800	Weak transcription	Hela-S3	cervix
25	chr3:119786600-119796000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr3:119786600-119797600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:119788000-119793000	Weak transcription	GM12878-XiMat	blood
28	chr3:119788400-119791800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr3:119788400-119795800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:119788400-119796200	Weak transcription	Adipose Nuclei	Adipose
31	chr3:119788400-119805400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:119788400-119808600	Weak transcription	Primary B cells from cord blood	blood
33	chr3:119789400-119791800	Enhancers	Psoas Muscle	Psoas
34	chr3:119789400-119797000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:119789400-119809200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:119789600-119791400	Enhancers	Ovary	ovary
37	chr3:119789800-119797200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr3:119789800-119807800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr3:119790000-119793800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr3:119790000-119797800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr3:119790000-119807600	Weak transcription	Liver	Liver
42	chr3:119790200-119791600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr3:119790200-119796000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr3:119790200-119805000	Weak transcription	HepG2	liver
45	chr3:119790400-119791200	Weak transcription	Pancreas	Pancrea
46	chr3:119790400-119791400	Weak transcription	Colonic Mucosa	Colon
47	chr3:119790400-119791600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr3:119790400-119791600	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr3:119790400-119794800	Weak transcription	Colon Smooth Muscle	Colon
50	chr3:119790400-119796000	Weak transcription	Fetal Lung	lung

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