Variant report

Variant	rs73177907
Chromosome Location	chr3:119805093-119805094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11915898	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11916594	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11919783	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11923854	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1381841	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17204605	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17205095	0.99[EUR][1000 genomes]
rs17810302	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs55658250	0.90[AFR][1000 genomes]
rs56114552	0.85[AFR][1000 genomes]
rs6765004	0.85[AFR][1000 genomes]
rs73175844	0.90[AFR][1000 genomes]
rs73175849	0.81[AFR][1000 genomes]
rs73175853	0.85[AFR][1000 genomes]
rs73175860	0.85[AFR][1000 genomes]
rs73175862	0.82[AFR][1000 genomes]
rs73175863	0.90[AFR][1000 genomes]
rs73175864	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73175870	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73175873	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73175877	0.92[EUR][1000 genomes]
rs73175879	0.94[EUR][1000 genomes]
rs73175880	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73175886	0.94[EUR][1000 genomes]
rs73175888	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73175891	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73175897	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73177904	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73177905	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7645180	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv3964	chr3:119786623-119831698	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
5	nsv829697	chr3:119802856-119918435	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119760200-119805400	Weak transcription	HMEC	breast
2	chr3:119764600-119812000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:119771400-119809400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:119771800-119805400	Weak transcription	NHEK	skin
5	chr3:119773200-119807600	Weak transcription	Right Ventricle	heart
6	chr3:119779400-119807400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:119779600-119807800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:119780600-119807800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:119788400-119805400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:119788400-119808600	Weak transcription	Primary B cells from cord blood	blood
11	chr3:119789400-119809200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:119789800-119807800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr3:119790000-119807600	Weak transcription	Liver	Liver
14	chr3:119790400-119805200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:119790600-119807400	Weak transcription	Brain Substantia Nigra	brain
16	chr3:119790600-119807800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:119790600-119809200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:119790800-119808000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr3:119790800-119809200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:119790800-119809400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:119791000-119809600	Weak transcription	Fetal Muscle Leg	muscle
22	chr3:119793000-119807400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:119793200-119805400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:119795200-119805200	Weak transcription	Hela-S3	cervix
25	chr3:119796800-119806000	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr3:119797000-119807400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:119797000-119807800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr3:119797200-119807600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:119797600-119808000	Weak transcription	NHLF	lung
30	chr3:119797800-119805200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:119798000-119805400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr3:119798000-119807600	Weak transcription	NHDF-Ad	bronchial
33	chr3:119798400-119807600	Weak transcription	Right Atrium	heart
34	chr3:119798400-119809400	Weak transcription	Lung	lung
35	chr3:119798600-119807400	Weak transcription	Thymus	Thymus
36	chr3:119798600-119807600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:119798600-119807600	Weak transcription	Fetal Thymus	thymus
38	chr3:119798800-119807600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr3:119798800-119807800	Weak transcription	K562	blood
40	chr3:119799000-119807600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr3:119799000-119808000	Weak transcription	Primary hematopoietic stem cells	blood
42	chr3:119799000-119810400	Weak transcription	Placenta	Placenta
43	chr3:119799200-119806800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:119799200-119810600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr3:119799600-119805400	Weak transcription	Fetal Intestine Small	intestine
46	chr3:119799600-119807600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr3:119799800-119805800	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr3:119799800-119809400	Weak transcription	HSMM	muscle
49	chr3:119800000-119807600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr3:119800400-119807600	Weak transcription	Psoas Muscle	Psoas

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