Variant report

Variant	rs73178585
Chromosome Location	chr5:88900428-88900429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73168421	1.00[AMR][1000 genomes]
rs73168442	1.00[AMR][1000 genomes]
rs73172352	1.00[AMR][1000 genomes]
rs73172368	1.00[AMR][1000 genomes]
rs73178732	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533373	chr5:88062497-89028098	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:88900000-88900600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:88900000-88900600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:88900400-88902200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:88900400-88902600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:88900400-88902600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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