Variant report

Variant	rs73179354
Chromosome Location	chr5:90157718-90157719
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2366933	0.82[AFR][1000 genomes]
rs2886811	0.82[AFR][1000 genomes]
rs6872705	1.00[AMR][1000 genomes]
rs715668	1.00[AMR][1000 genomes]
rs73175296	1.00[AMR][1000 genomes]
rs73175300	1.00[AMR][1000 genomes]
rs73177408	1.00[AMR][1000 genomes]
rs73177413	1.00[AMR][1000 genomes]
rs73177422	1.00[AMR][1000 genomes]
rs73177427	1.00[AMR][1000 genomes]
rs73179309	1.00[AMR][1000 genomes]
rs73179321	1.00[AMR][1000 genomes]
rs73179328	1.00[AMR][1000 genomes]
rs73179329	1.00[AMR][1000 genomes]
rs73179336	1.00[AMR][1000 genomes]
rs73179340	1.00[AMR][1000 genomes]
rs73179343	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73179344	1.00[AMR][1000 genomes]
rs73181318	1.00[AMR][1000 genomes]
rs73181321	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73181323	1.00[AMR][1000 genomes]
rs73181330	1.00[AMR][1000 genomes]
rs7737712	1.00[AMR][1000 genomes]
rs949788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv882367	chr5:89956991-90209824	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1015449	chr5:89968626-90219398	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv517049	chr5:90003131-90262475	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90112000-90160600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:90112000-90175800	Weak transcription	Fetal Brain Female	brain
3	chr5:90142600-90162400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:90148200-90171400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:90148400-90164800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:90150400-90158200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:90150400-90159800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:90151600-90162400	Weak transcription	K562	blood
9	chr5:90151800-90174000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:90151800-90174600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:90152000-90165000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:90152200-90158000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:90152600-90157800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:90155200-90158000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:90157600-90160400	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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