Variant report

Variant	rs73181321
Chromosome Location	chr5:90164684-90164685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:90161853..90166366-chr5:90170217..90173249,4	K562	blood:
2	chr5:90162368..90164776-chr5:90166306..90168759,2	K562	blood:
3	chr5:90160869..90165602-chr5:90675521..90682094,8	K562	blood:
4	chr5:90158577..90166779-chr5:90674301..90681062,16	MCF-7	breast:
5	chr5:90161212..90166184-chr5:90674566..90680439,9	K562	blood:
6	chr5:90163456..90166184-chr5:90179464..90181248,2	K562	blood:
7	chr5:90162422..90165076-chr5:90191582..90194100,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs6872705	1.00[AMR][1000 genomes]
rs715668	1.00[AMR][1000 genomes]
rs73175296	1.00[AMR][1000 genomes]
rs73175300	1.00[AMR][1000 genomes]
rs73177408	1.00[AMR][1000 genomes]
rs73177413	1.00[AMR][1000 genomes]
rs73177422	1.00[AMR][1000 genomes]
rs73177427	1.00[AMR][1000 genomes]
rs73179309	1.00[AMR][1000 genomes]
rs73179321	1.00[AMR][1000 genomes]
rs73179328	1.00[AMR][1000 genomes]
rs73179329	1.00[AMR][1000 genomes]
rs73179336	1.00[AMR][1000 genomes]
rs73179340	1.00[AMR][1000 genomes]
rs73179343	1.00[AMR][1000 genomes]
rs73179344	1.00[AMR][1000 genomes]
rs73179354	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73181318	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73181323	1.00[AMR][1000 genomes]
rs73181330	1.00[AMR][1000 genomes]
rs7737712	1.00[AMR][1000 genomes]
rs949788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv882367	chr5:89956991-90209824	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1015449	chr5:89968626-90219398	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv517049	chr5:90003131-90262475	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90112000-90175800	Weak transcription	Fetal Brain Female	brain
2	chr5:90148200-90171400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:90148400-90164800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:90151800-90174000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:90151800-90174600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:90152000-90165000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:90159800-90164800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:90162800-90166400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:90163000-90164800	Weak transcription	K562	blood
10	chr5:90163200-90168400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:90163400-90166200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:90163400-90166400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:90163400-90168800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr5:90163600-90165000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:90163600-90166400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:90163600-90167400	Weak transcription	Fetal Lung	lung
17	chr5:90163600-90167400	Weak transcription	Stomach Mucosa	stomach
18	chr5:90163600-90167800	Weak transcription	Adipose Nuclei	Adipose
19	chr5:90163600-90171200	Weak transcription	Fetal Kidney	kidney
20	chr5:90163600-90194400	Weak transcription	Pancreas	Pancrea
21	chr5:90163800-90167200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:90164000-90166600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr5:90164000-90167200	Weak transcription	A549	lung
24	chr5:90164000-90167400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr5:90164000-90167400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr5:90164000-90168400	Weak transcription	HepG2	liver
27	chr5:90164400-90174400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr5:90164400-90174800	Enhancers	Liver	Liver
29	chr5:90164600-90166200	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr5:90164600-90166200	Strong transcription	HUES64 Cell Line	embryonic stem cell

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