Variant report

Variant	rs73179936
Chromosome Location	chr3:121285781-121285782
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:121285594-121285909	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr3:121285703-121285901	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr3:121285595-121285914	MCF10A-Er-Src	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:121285779-121285829	SK-N-MC	brain:	n/a
2	chr3:121285779-121285829	T-47D	breast:	n/a
3	chr3:121285779-121285829	MCF10A-Er-Src	breast:	n/a
4	chr3:121285779-121285829	HRCEpiC	kidney:	n/a
5	chr3:121285779-121285829	ECC-1	luminal epithelium:	n/a
6	chr3:121285779-121285829	PrEC	prostate:	n/a
7	chr3:121285779-121285829	AG04449	skin:	fetal
8	chr3:121285779-121285829	ProgFib	skin:	n/a
9	chr3:121285779-121285829	Jurkat	blood:	n/a
10	chr3:121285779-121285829	HEEpiC	esophagus:	n/a
11	chr3:121285779-121285829	IMR90	lung:	fetal
12	chr3:121285779-121285829	ovcar-3	ovarian:	n/a
13	chr3:121285779-121285829	SK-N-SH	brain:	n/a
14	chr3:121285779-121285829	AG09309	skin:	n/a
15	chr3:121285779-121285829	BE2_C	brain:	n/a
16	chr3:121285779-121285829	GM06990	blood:	n/a
17	chr3:121285779-121285829	A549	lung:	n/a
18	chr3:121285779-121285829	HL-60	blood:	n/a
19	chr3:121285779-121285829	AG09319	gingival:	n/a
20	chr3:121285779-121285829	CMK	blood:	n/a
21	chr3:121285779-121285829	HCT-116	colon:	n/a
22	chr3:121285779-121285829	Caco-2	colon:	n/a
23	chr3:121285779-121285829	HUVEC	blood vessel:	n/a
24	chr3:121285779-121285829	HCPEpiC	choroid plexus:	n/a
25	chr3:121285779-121285829	K562	blood:	n/a
26	chr3:121285779-121285829	HMEC	breast:	n/a
27	chr3:121285779-121285829	MCF-7	breast:	n/a
28	chr3:121285779-121285829	SK-N-SH_RA	brain:	n/a
29	chr3:121285779-121285829	GM12891	blood:	n/a
30	chr3:121285779-121285829	LNCaP	prostate:	n/a
31	chr3:121285779-121285829	NT2-D1	testis:	n/a
32	chr3:121285779-121285829	SKMC	muscle:	n/a
33	chr3:121285779-121285829	AG04450	lung:	fetal
34	chr3:121285779-121285829	HCM	heart:	n/a
35	chr3:121285779-121285829	HNPCEpiC	eye:	n/a
36	chr3:121285779-121285829	RPTEC	kidney:	n/a
37	chr3:121285779-121285829	PFSK-1	brain:	n/a
38	chr3:121285779-121285829	H1-hESC	embryonic stem cell:	embryo
39	chr3:121285779-121285829	Hela-S3	cervix:	n/a
40	chr3:121285779-121285829	HEK293	kidney:	embryo
41	chr3:121285779-121285829	AG10803	skin:	n/a
42	chr3:121285779-121285829	HPAEpiC	pulmonary alveolar:	n/a
43	chr3:121285779-121285829	NB4	blood:	n/a
44	chr3:121285779-121285829	PANC-1	pancreas:	n/a
45	chr3:121285779-121285829	HRE	kidney:	n/a
46	chr3:121285779-121285829	HRPEpiC	eye:	n/a
47	chr3:121285779-121285829	GM19239	blood:	n/a
48	chr3:121285779-121285829	SAEC	small airway:	n/a
49	chr3:121285779-121285829	AoSMC	blood vessel:	n/a
50	chr3:121285779-121285829	U87	brain:	n/a

No data

Variant related genes	Relation type
ARGFX	TF binding region
ARGFX	CpG island

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10212489	1.00[ASN][1000 genomes]
rs11555758	1.00[ASN][1000 genomes]
rs3218647	1.00[ASN][1000 genomes]
rs35766343	1.00[ASN][1000 genomes]
rs36065146	1.00[ASN][1000 genomes]
rs41541714	1.00[ASN][1000 genomes]
rs41544013	1.00[ASN][1000 genomes]
rs41551812	1.00[ASN][1000 genomes]
rs41561919	1.00[ASN][1000 genomes]
rs61427766	1.00[ASN][1000 genomes]
rs73179904	1.00[ASN][1000 genomes]
rs73179909	1.00[ASN][1000 genomes]
rs73179919	1.00[ASN][1000 genomes]
rs73179920	1.00[ASN][1000 genomes]
rs73179926	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179927	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179928	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183167	1.00[ASN][1000 genomes]
rs73183171	1.00[ASN][1000 genomes]
rs73183176	1.00[ASN][1000 genomes]
rs73183177	1.00[ASN][1000 genomes]
rs73183178	1.00[ASN][1000 genomes]
rs73183179	1.00[ASN][1000 genomes]
rs73191757	1.00[ASN][1000 genomes]
rs73191760	1.00[ASN][1000 genomes]
rs73191764	1.00[ASN][1000 genomes]
rs73191766	1.00[ASN][1000 genomes]
rs73191769	1.00[ASN][1000 genomes]
rs73191770	1.00[ASN][1000 genomes]
rs73191771	1.00[ASN][1000 genomes]
rs73191774	1.00[ASN][1000 genomes]
rs73191784	1.00[ASN][1000 genomes]
rs73191785	1.00[ASN][1000 genomes]
rs73191786	1.00[ASN][1000 genomes]
rs73191787	1.00[ASN][1000 genomes]
rs73191789	1.00[ASN][1000 genomes]
rs73191794	1.00[ASN][1000 genomes]
rs73191798	1.00[ASN][1000 genomes]
rs73191799	1.00[ASN][1000 genomes]
rs73191802	1.00[ASN][1000 genomes]
rs73193605	1.00[ASN][1000 genomes]
rs73193614	1.00[ASN][1000 genomes]
rs73193618	1.00[ASN][1000 genomes]
rs73193620	1.00[ASN][1000 genomes]
rs73193621	1.00[ASN][1000 genomes]
rs73193622	1.00[ASN][1000 genomes]
rs73193625	1.00[ASN][1000 genomes]
rs73193627	1.00[ASN][1000 genomes]
rs73193629	1.00[ASN][1000 genomes]
rs73193633	1.00[ASN][1000 genomes]
rs73193639	1.00[ASN][1000 genomes]
rs73193640	1.00[ASN][1000 genomes]
rs9829579	1.00[ASN][1000 genomes]
rs9862879	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998555	chr3:120700604-121348015	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv591395	chr3:120970900-121501070	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv591396	chr3:120970900-121557533	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv591397	chr3:120977383-121505882	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv591400	chr3:121070299-121339354	Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv999335	chr3:121100283-121408766	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv877381	chr3:121192350-121343500	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1007522	chr3:121200563-121374051	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv999349	chr3:121253990-121360206	Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	esv3445327	chr3:121260311-121288302	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
11	esv2757006	chr3:121264886-121323465	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	esv2759172	chr3:121264886-121323465	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121281400-121289000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:121283800-121293400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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