Variant report

Variant	rs7318204
Chromosome Location	chr13:93904704-93904705
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:93900253..93901770-chr13:93904316..93907177,2	K562	blood:
2	chr13:93904443..93906653-chr13:93925535..93927462,2	K562	blood:
3	chr13:93904272..93906855-chr13:93911609..93913523,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7321850	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93897000-93910400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:93897200-93923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr13:93897400-93907000	Weak transcription	Aorta	Aorta
4	chr13:93901400-93907200	Weak transcription	Colon Smooth Muscle	Colon
5	chr13:93901400-93923400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:93901600-93905600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:93902400-93910200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:93902400-93913000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:93902400-93914200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:93902600-93906200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:93902800-93905600	Weak transcription	HepG2	liver
12	chr13:93902800-93912200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr13:93902800-93912400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:93902800-93912800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:93903000-93922800	Weak transcription	Fetal Stomach	stomach
16	chr13:93903000-93923000	Weak transcription	Fetal Intestine Small	intestine
17	chr13:93903400-93905200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr13:93903600-93905600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr13:93904400-93904800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr13:93904600-93904800	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr13:93904600-93905000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr13:93904600-93905000	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links