Variant report

Variant	rs7321850
Chromosome Location	chr13:93901824-93901825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:93899798..93901892-chr9:134131484..134133975,2	K562	blood:
2	chr13:93900783..93902371-chr13:108518560..108520296,2	K562	blood:
3	chr13:93896826..93900351-chr13:93900549..93903054,4	K562	blood:
4	chr13:93877323..93880344-chr13:93900114..93902371,3	MCF-7	breast:
5	chr13:93894789..93899611-chr13:93899761..93903867,5	K562	blood:
6	chr13:93899962..93902083-chr13:108641328..108643752,2	K562	blood:
7	chr13:93901042..93904106-chr13:93907651..93910569,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183098	Chromatin interaction
ENSG00000204442	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs390904	0.80[YRI][hapmap]
rs421861	0.80[YRI][hapmap]
rs428015	0.80[YRI][hapmap]
rs428591	0.94[YRI][hapmap]
rs7318204	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93897000-93904200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:93897000-93910400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:93897200-93902800	Weak transcription	Fetal Stomach	stomach
4	chr13:93897200-93923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr13:93897400-93907000	Weak transcription	Aorta	Aorta
6	chr13:93898400-93902200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr13:93899800-93903200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:93900400-93902200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr13:93900600-93902000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr13:93900600-93902400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr13:93900800-93902000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr13:93900800-93902200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr13:93900800-93902200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr13:93900800-93902200	Enhancers	K562	blood
15	chr13:93900800-93902600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr13:93900800-93903200	Enhancers	Osteobl	bone
17	chr13:93900800-93903600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr13:93901000-93902200	Enhancers	H9 Cell Line	embryonic stem cell
19	chr13:93901000-93902200	Enhancers	HSMMtube	muscle
20	chr13:93901000-93902400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr13:93901000-93902400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr13:93901000-93902400	Enhancers	NHLF	lung
23	chr13:93901000-93902800	Enhancers	HSMM	muscle
24	chr13:93901200-93902200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr13:93901200-93902400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr13:93901200-93902600	Enhancers	HMEC	breast
27	chr13:93901200-93903400	Weak transcription	Right Atrium	heart
28	chr13:93901400-93902200	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr13:93901400-93902400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr13:93901400-93902400	Enhancers	NHEK	skin
31	chr13:93901400-93902800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr13:93901400-93907200	Weak transcription	Colon Smooth Muscle	Colon
33	chr13:93901400-93923400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr13:93901600-93902000	Active TSS	HepG2	liver
35	chr13:93901600-93902400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr13:93901600-93905600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr13:93901800-93902000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr13:93901800-93902200	Weak transcription	A549	lung
39	chr13:93901800-93902200	Enhancers	NH-A	brain
40	chr13:93901800-93902400	Enhancers	H1 Cell Line	embryonic stem cell
41	chr13:93901800-93902800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr13:93901800-93904400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links