Variant report

Variant	rs73182587
Chromosome Location	chr13:49436722-49436723
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs66505239	1.00[AFR][1000 genomes]
rs66631927	1.00[AFR][1000 genomes]
rs73182597	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv2758327	chr13:49283983-49472517	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2759936	chr13:49283983-49472517	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832606	chr13:49352212-49506009	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1036395	chr13:49435412-49471198	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49431800-49438200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr13:49432000-49438000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr13:49432400-49437800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr13:49432600-49440400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:49433600-49447800	Weak transcription	Left Ventricle	heart
6	chr13:49433800-49438000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr13:49434200-49447800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr13:49434800-49440600	Weak transcription	Fetal Intestine Large	intestine
9	chr13:49435000-49440200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:49435000-49440400	Weak transcription	Stomach Mucosa	stomach
11	chr13:49435200-49440200	Weak transcription	Fetal Intestine Small	intestine
12	chr13:49435400-49437200	Enhancers	Primary hematopoietic stem cells	blood
13	chr13:49435800-49436800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr13:49436200-49436800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:49436400-49437800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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