Variant report

Variant	rs73182597
Chromosome Location	chr13:49447869-49447870
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:49446729..49448330-chr13:49549496..49551503,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102531	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs66505239	1.00[AFR][1000 genomes]
rs66631927	1.00[AFR][1000 genomes]
rs73182587	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv2758327	chr13:49283983-49472517	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2759936	chr13:49283983-49472517	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832606	chr13:49352212-49506009	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1036395	chr13:49435412-49471198	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49443000-49448000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr13:49443800-49448400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:49446400-49450000	Enhancers	Fetal Intestine Large	intestine
4	chr13:49446600-49449600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
5	chr13:49446800-49448000	Enhancers	Fetal Heart	heart
6	chr13:49446800-49448400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr13:49446800-49451000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr13:49447000-49448000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr13:49447200-49449200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:49447200-49449400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr13:49447400-49448000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr13:49447400-49448000	Enhancers	HSMM	muscle
13	chr13:49447400-49449000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr13:49447400-49449000	Enhancers	Fetal Intestine Small	intestine
15	chr13:49447400-49449600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
16	chr13:49447600-49448000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr13:49447600-49448000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
18	chr13:49447600-49448000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr13:49447600-49448000	Bivalent Enhancer	NHDF-Ad	bronchial
20	chr13:49447600-49448400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr13:49447600-49448600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr13:49447600-49448600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr13:49447600-49448800	Enhancers	Placenta	Placenta
24	chr13:49447800-49448000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr13:49447800-49448000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr13:49447800-49448000	Enhancers	Left Ventricle	heart
27	chr13:49447800-49448000	Bivalent Enhancer	NHEK	skin
28	chr13:49447800-49448400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr13:49447800-49448400	Enhancers	HMEC	breast
30	chr13:49447800-49448600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr13:49447800-49448600	Enhancers	Right Ventricle	heart
32	chr13:49447800-49448800	Enhancers	H9 Cell Line	embryonic stem cell
33	chr13:49447800-49448800	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr13:49447800-49448800	Enhancers	Hela-S3	cervix
35	chr13:49447800-49448800	Enhancers	HSMMtube	muscle
36	chr13:49447800-49449000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
37	chr13:49447800-49449600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr13:49447800-49451400	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links