Variant report

Variant	rs73187887
Chromosome Location	chr21:28452256-28452257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:28449732..28451857-chr21:28452054..28455156,3	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1041423	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1041424	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10482980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17600993	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17659214	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17660338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs233588	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2830664	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2830676	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2830685	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2830690	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28463781	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28549866	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs404112	0.88[AMR][1000 genomes]
rs7279282	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73187872	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73187879	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73187889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73187890	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73187892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73187893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73187894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73187895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73187898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73189810	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9284446	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9975373	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9976558	0.83[AMR][1000 genomes]
rs9977974	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9984557	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2758532	chr21:28380230-28540443	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	esv2758817	chr21:28380230-28540443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv1062808	chr21:28443252-28537209	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	nsv544414	chr21:28443252-28537209	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	nsv1063321	chr21:28443774-28460820	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	esv3455358	chr21:28450747-28459949	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	esv3455357	chr21:28450947-28459840	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
9	esv3455359	chr21:28450961-28459838	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
10	esv2763687	chr21:28451370-28459911	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
11	esv2760707	chr21:28451370-28460775	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28447400-28467200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr21:28452000-28452400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links