Variant report

Variant	rs9976558
Chromosome Location	chr21:28424694-28424695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1041423	0.89[AMR][1000 genomes]
rs1041424	0.89[AMR][1000 genomes]
rs10482980	0.83[AMR][1000 genomes]
rs17600993	0.94[AMR][1000 genomes]
rs17659214	0.94[AMR][1000 genomes]
rs17660338	0.83[AMR][1000 genomes]
rs233588	0.94[AMR][1000 genomes]
rs2830664	0.94[AMR][1000 genomes]
rs2830676	0.89[AMR][1000 genomes]
rs2830685	0.94[AMR][1000 genomes]
rs2830690	0.94[AMR][1000 genomes]
rs2830699	0.84[AMR][1000 genomes]
rs28463781	0.94[AMR][1000 genomes]
rs28549866	0.94[AMR][1000 genomes]
rs404112	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7279282	0.94[AMR][1000 genomes]
rs73187872	0.83[AMR][1000 genomes]
rs73187879	0.94[AMR][1000 genomes]
rs73187887	0.83[AMR][1000 genomes]
rs73187889	0.83[AMR][1000 genomes]
rs73187892	0.83[AMR][1000 genomes]
rs73187893	0.83[AMR][1000 genomes]
rs73187894	0.83[AMR][1000 genomes]
rs73187895	0.83[AMR][1000 genomes]
rs73187898	0.83[AMR][1000 genomes]
rs73189810	0.94[AMR][1000 genomes]
rs73189877	0.84[AMR][1000 genomes]
rs9284446	0.94[AMR][1000 genomes]
rs9975373	0.94[AMR][1000 genomes]
rs9977974	0.94[AMR][1000 genomes]
rs9984557	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2758532	chr21:28380230-28540443	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	esv2758817	chr21:28380230-28540443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	esv3354445	chr21:28423706-28426254	Weak transcription	lncRNA	n/a	inside rSNPs	n/a
5	esv3335922	chr21:28423881-28426079	Weak transcription	lncRNA	n/a	inside rSNPs	n/a
6	esv3356167	chr21:28424381-28425579	Weak transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28419800-28424800	Weak transcription	Ovary	ovary
2	chr21:28420600-28426200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr21:28420600-28431400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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