Variant report

Variant	rs73190100
Chromosome Location	chr8:8729407-8729408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:8729141..8730774-chr8:8738935..8740883,2	MCF-7	breast:
2	chr8:8728731..8732330-chr8:8733587..8735622,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56288708	0.83[EUR][1000 genomes]
rs73184220	1.00[EUR][1000 genomes]
rs73184229	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73190081	1.00[EUR][1000 genomes]
rs73190090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73190098	1.00[EUR][1000 genomes]
rs73192207	1.00[EUR][1000 genomes]
rs73200026	1.00[AMR][1000 genomes]
rs73201844	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1019606	chr8:8353661-8736992	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539456	chr8:8353661-8736992	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv995047	chr8:8353662-8857913	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1022511	chr8:8493992-8737132	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv539457	chr8:8493992-8737132	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv831228	chr8:8608387-8790790	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv1018828	chr8:8609880-8790660	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv1022331	chr8:8610035-8787981	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
11	esv2757257	chr8:8707639-8747894	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv2759591	chr8:8707639-8747894	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv818595	chr8:8712895-8752684	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	nsv1030977	chr8:8725992-8739514	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1026305	chr8:8726128-8739514	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8699400-8729600	Weak transcription	Fetal Stomach	stomach
2	chr8:8709600-8730000	Weak transcription	HSMMtube	muscle
3	chr8:8714400-8730000	Weak transcription	Aorta	Aorta
4	chr8:8714800-8730000	Weak transcription	Brain Angular Gyrus	brain
5	chr8:8717800-8735200	Weak transcription	Esophagus	oesophagus
6	chr8:8718000-8730000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:8718200-8729800	Weak transcription	Right Ventricle	heart
8	chr8:8718400-8742200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:8718600-8729800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr8:8718800-8730400	Weak transcription	HSMM	muscle
11	chr8:8719000-8730400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:8724600-8735000	Weak transcription	Brain Substantia Nigra	brain
13	chr8:8725200-8730000	Enhancers	Fetal Thymus	thymus
14	chr8:8725400-8730000	Enhancers	Fetal Brain Male	brain
15	chr8:8725800-8731000	Enhancers	Primary B cells from cord blood	blood
16	chr8:8725800-8732800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr8:8726000-8730600	Enhancers	H1 Cell Line	embryonic stem cell
18	chr8:8726000-8730600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:8726000-8731000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr8:8726000-8731600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr8:8726000-8732200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr8:8726000-8732200	Enhancers	Fetal Intestine Large	intestine
23	chr8:8726000-8732600	Enhancers	Duodenum Mucosa	Duodenum
24	chr8:8726200-8730000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr8:8726800-8729800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr8:8726800-8737600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:8726800-8737600	Weak transcription	NHEK	skin
28	chr8:8727000-8729800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr8:8727000-8730000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr8:8727000-8731200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr8:8727200-8729800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr8:8727200-8729800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr8:8727200-8729800	Enhancers	Thymus	Thymus
34	chr8:8727200-8730600	Enhancers	Placenta	Placenta
35	chr8:8727200-8730800	Enhancers	Primary B cells from peripheral blood	blood
36	chr8:8727200-8732800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr8:8727400-8729600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr8:8727400-8729800	Enhancers	Primary T cells fromperipheralblood	blood
39	chr8:8727400-8729800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr8:8727400-8732600	Enhancers	Stomach Mucosa	stomach
41	chr8:8727600-8729600	Enhancers	Stomach Smooth Muscle	stomach
42	chr8:8727600-8729800	Enhancers	Primary T cells from cord blood	blood
43	chr8:8727600-8729800	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr8:8727600-8730000	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr8:8727600-8730000	Enhancers	Rectal Smooth Muscle	rectum
46	chr8:8727600-8730200	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr8:8727600-8731800	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr8:8727600-8733400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr8:8727800-8729800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr8:8727800-8730800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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