Variant report

Variant	rs7319682
Chromosome Location	chr13:49303843-49303844
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs61563834	1.00[AMR][1000 genomes]
rs7321754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486881	1.00[AMR][1000 genomes]
rs73486884	1.00[AMR][1000 genomes]
rs73489018	1.00[AMR][1000 genomes]
rs73489033	1.00[AMR][1000 genomes]
rs73489034	1.00[AMR][1000 genomes]
rs73489037	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv832605	chr13:49171305-49344970	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	esv2758327	chr13:49283983-49472517	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2759936	chr13:49283983-49472517	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49300200-49306400	Enhancers	Hela-S3	cervix
2	chr13:49300600-49306800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:49301200-49304000	Weak transcription	Ovary	ovary
4	chr13:49301200-49304200	Weak transcription	Pancreas	Pancrea
5	chr13:49302200-49305400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:49302400-49306000	Weak transcription	Fetal Muscle Leg	muscle
7	chr13:49302600-49304400	Weak transcription	Left Ventricle	heart
8	chr13:49302600-49305200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:49302800-49304000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr13:49303000-49312200	Weak transcription	Fetal Lung	lung
11	chr13:49303400-49305800	Weak transcription	Adipose Nuclei	Adipose
12	chr13:49303800-49305000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links