Variant report

Variant	rs73489034
Chromosome Location	chr13:49141532-49141533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:49115025..49117372-chr13:49140241..49143183,2	MCF-7	breast:
2	chr13:49106056..49107969-chr13:49140390..49142172,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136161	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs61563834	1.00[AMR][1000 genomes]
rs7319682	1.00[AMR][1000 genomes]
rs7321754	1.00[AMR][1000 genomes]
rs73486881	1.00[AMR][1000 genomes]
rs73486884	1.00[AMR][1000 genomes]
rs73489018	1.00[AMR][1000 genomes]
rs73489033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489039	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1041275	chr13:49045566-49242357	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv541769	chr13:49045566-49242357	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv455881	chr13:49134412-49169570	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv561591	chr13:49134412-49169570	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49135000-49155000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:49135200-49141800	Weak transcription	Placenta	Placenta
3	chr13:49136800-49142000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:49137000-49141600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:49137000-49142000	Weak transcription	HMEC	breast
6	chr13:49137200-49141600	Weak transcription	HSMM	muscle
7	chr13:49137200-49153000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr13:49137400-49145200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr13:49138600-49141600	Weak transcription	Osteobl	bone
10	chr13:49138600-49142000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:49138800-49145600	Weak transcription	HUVEC	blood vessel
12	chr13:49139000-49144800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr13:49139200-49141800	Weak transcription	Dnd41	blood
14	chr13:49139600-49141600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr13:49139600-49144400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr13:49140000-49144200	Weak transcription	K562	blood
17	chr13:49140600-49142000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr13:49140800-49146400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:49141000-49145000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr13:49141200-49142000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr13:49141200-49142200	Enhancers	Rectal Smooth Muscle	rectum
22	chr13:49141200-49147000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr13:49141400-49141600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:49141400-49141600	Enhancers	Colon Smooth Muscle	Colon
25	chr13:49141400-49141600	Enhancers	HSMMtube	muscle
26	chr13:49141400-49141800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr13:49141400-49142000	Enhancers	Adipose Nuclei	Adipose
28	chr13:49141400-49142800	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr13:49141400-49143400	Enhancers	Stomach Mucosa	stomach
30	chr13:49141400-49144800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr13:49141400-49145800	Enhancers	Fetal Stomach	stomach
32	chr13:49141400-49146200	Enhancers	HepG2	liver
33	chr13:49141400-49146400	Enhancers	Fetal Lung	lung
34	chr13:49141400-49146600	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links