Variant report

Variant	rs7319770
Chromosome Location	chr13:50295381-50295382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11839492	1.00[AMR][1000 genomes]
rs11840413	1.00[AMR][1000 genomes]
rs11841547	1.00[AMR][1000 genomes]
rs11841789	1.00[AMR][1000 genomes]
rs11843469	1.00[AMR][1000 genomes]
rs11843822	1.00[AMR][1000 genomes]
rs61750352	1.00[AMR][1000 genomes]
rs7317048	1.00[AMR][1000 genomes]
rs7317201	1.00[AMR][1000 genomes]
rs7317608	1.00[AMR][1000 genomes]
rs7329334	1.00[AMR][1000 genomes]
rs7330738	1.00[AMR][1000 genomes]
rs7984323	1.00[AMR][1000 genomes]
rs7984679	1.00[AMR][1000 genomes]
rs7989903	1.00[AMR][1000 genomes]
rs7991144	1.00[AMR][1000 genomes]
rs8002772	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900072	chr13:50266109-50381016	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv900073	chr13:50286218-50381016	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50266200-50296000	Weak transcription	K562	blood
2	chr13:50266200-50298600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:50266200-50298800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:50266200-50307800	Weak transcription	Gastric	stomach
5	chr13:50266200-50316000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:50266400-50295800	Weak transcription	Small Intestine	intestine
7	chr13:50266400-50349000	Weak transcription	Esophagus	oesophagus
8	chr13:50272400-50296000	Weak transcription	Fetal Heart	heart
9	chr13:50273200-50326000	Weak transcription	Aorta	Aorta
10	chr13:50273200-50333800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:50276000-50299800	Weak transcription	Right Ventricle	heart
12	chr13:50276000-50307600	Weak transcription	Pancreas	Pancrea
13	chr13:50277000-50318400	Weak transcription	Hela-S3	cervix
14	chr13:50280000-50308000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr13:50280600-50295800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr13:50280600-50296000	Weak transcription	Colon Smooth Muscle	Colon
17	chr13:50283000-50296000	Weak transcription	HSMMtube	muscle
18	chr13:50289600-50296800	Strong transcription	Fetal Thymus	thymus
19	chr13:50289800-50296000	Weak transcription	GM12878-XiMat	blood
20	chr13:50289800-50296600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr13:50290000-50295400	Weak transcription	Brain Hippocampus Middle	brain
22	chr13:50290000-50295800	Weak transcription	NHLF	lung
23	chr13:50290000-50296000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr13:50290000-50296000	Weak transcription	HepG2	liver
25	chr13:50290000-50296600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr13:50290000-50297000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr13:50290000-50297000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr13:50290000-50297000	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr13:50290000-50298800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr13:50290000-50299400	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr13:50290000-50304600	Strong transcription	Liver	Liver
32	chr13:50290000-50306200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr13:50290000-50306800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr13:50290000-50324000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr13:50290000-50334000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr13:50290200-50295800	Weak transcription	NHEK	skin
37	chr13:50290200-50297000	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr13:50290200-50297200	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr13:50290200-50304600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr13:50290200-50316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr13:50290400-50297000	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr13:50290400-50297000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr13:50290400-50306800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr13:50290400-50307200	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr13:50290600-50296600	Strong transcription	Primary T cells from cord blood	blood
46	chr13:50290600-50297000	Strong transcription	Primary B cells from peripheral blood	blood
47	chr13:50290600-50304400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr13:50290800-50296600	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr13:50290800-50297000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr13:50290800-50297000	Strong transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links