Variant report

Variant	rs73201510
Chromosome Location	chr7:107925329-107925330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107919806..107922501-chr7:107923966..107926073,3	K562	blood:
2	chr7:107923082..107925361-chr7:107930401..107931906,2	K562	blood:
3	chr7:107923634..107926362-chr7:107928616..107931028,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13238345	1.00[ASN][1000 genomes]
rs35418774	1.00[ASN][1000 genomes]
rs73197610	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73197632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73197639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73201520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1030425	chr7:107910716-108041036	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107918400-107935000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:107919400-107926400	Enhancers	HUVEC	blood vessel
3	chr7:107922000-107926400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:107923600-107925400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:107923800-107925600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr7:107924000-107930200	Weak transcription	Fetal Lung	lung
7	chr7:107924200-107927200	Enhancers	A549	lung
8	chr7:107924200-107929400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:107924200-107939600	Weak transcription	Pancreas	Pancrea
10	chr7:107924400-107926400	Enhancers	NHEK	skin
11	chr7:107924600-107925600	Enhancers	Fetal Thymus	thymus
12	chr7:107924600-107925800	Enhancers	Brain Cingulate Gyrus	brain
13	chr7:107924600-107926000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:107924600-107926600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:107924800-107925400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr7:107924800-107925800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:107924800-107925800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:107924800-107926000	Enhancers	Brain Hippocampus Middle	brain
19	chr7:107924800-107926600	Enhancers	HMEC	breast
20	chr7:107924800-107927400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:107925000-107925400	Enhancers	Primary B cells from cord blood	blood
22	chr7:107925000-107925400	Enhancers	Esophagus	oesophagus
23	chr7:107925000-107925800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr7:107925000-107925800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:107925000-107925800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr7:107925000-107925800	Enhancers	Primary B cells from peripheral blood	blood
27	chr7:107925000-107925800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:107925000-107925800	Enhancers	Brain Anterior Caudate	brain
29	chr7:107925000-107925800	Enhancers	Brain Substantia Nigra	brain
30	chr7:107925000-107926200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr7:107925000-107927200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr7:107925200-107925400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr7:107925200-107925400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:107925200-107925400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr7:107925200-107925400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:107925200-107925400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:107925200-107925600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr7:107925200-107925600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:107925200-107925600	Enhancers	GM12878-XiMat	blood
40	chr7:107925200-107925800	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr7:107925200-107925800	Enhancers	Brain Angular Gyrus	brain
42	chr7:107925200-107926200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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