Variant report
| Variant | rs73202840 |
|---|---|
| Chromosome Location | chr3:191275031-191275032 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:3)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-PYDC2-1 | chr3:191274952-191275173 | XLOC_002968 |
| 2 | lnc-PYDC2-1 | chr3:191274951-191275173 | NONHSAT093969 |
| 3 | lnc-PYDC2-1 | chr3:191274952-191275173 | XLOC_002968 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs12497172 | 0.97[ASN][1000 genomes] |
| rs12631280 | 0.97[ASN][1000 genomes] |
| rs12631424 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12631995 | 0.97[ASN][1000 genomes] |
| rs12632738 | 0.97[ASN][1000 genomes] |
| rs12632863 | 0.97[ASN][1000 genomes] |
| rs12635114 | 0.96[ASN][1000 genomes] |
| rs12635134 | 0.97[ASN][1000 genomes] |
| rs12635136 | 0.96[ASN][1000 genomes] |
| rs12635139 | 0.97[ASN][1000 genomes] |
| rs12638649 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1358028 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1917793 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1917795 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2365030 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4074485 | 0.97[ASN][1000 genomes] |
| rs4074487 | 0.97[ASN][1000 genomes] |
| rs4686578 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4686581 | 0.97[ASN][1000 genomes] |
| rs4687224 | 0.97[ASN][1000 genomes] |
| rs73202846 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73202849 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73202856 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73202859 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73202866 | 0.97[ASN][1000 genomes] |
| rs73202872 | 0.97[ASN][1000 genomes] |
| rs73202876 | 0.97[ASN][1000 genomes] |
| rs7427536 | 0.97[ASN][1000 genomes] |
| rs7427590 | 0.97[ASN][1000 genomes] |
| rs7427642 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7429772 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7431442 | 0.97[ASN][1000 genomes] |
| rs7432132 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs940911 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9637461 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931943 | chr3:190860224-191321873 | Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv2757910 | chr3:190867011-191279107 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | esv2759209 | chr3:190867011-191279107 | Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv1008969 | chr3:191192569-191383856 | Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv915689 | chr3:191244719-191479974 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 6 | esv1002056 | chr3:191267312-191275247 | Weak transcription Enhancers ZNF genes & repeats Strong transcription | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:191272400-191301400 | Weak transcription | K562 | blood |
| 2 | chr3:191274600-191275400 | ZNF genes & repeats | HUES6 Cell Line | embryonic stem cell |
| 3 | chr3:191274600-191276200 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
