Variant report

Variant	rs73202856
Chromosome Location	chr3:191284725-191284726
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr3:191284253-191284742	SK-N-SH	brain:	n/a	n/a
2	POLR2A	chr3:191284376-191285443	K562	blood:	n/a	n/a
3	STAT3	chr3:191284693-191284765	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:191282988..191286150-chr3:191301534..191304296,3	K562	blood:

Variant related genes	Relation type
ENSG00000223812	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12497172	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12631280	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12631424	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631995	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12632738	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12632863	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12635114	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12635134	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12635136	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12635139	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12638649	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1358028	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1917793	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1917795	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2365030	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4074485	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4074487	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4686578	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4686581	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4687224	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73202840	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73202846	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73202849	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73202859	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73202866	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73202872	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73202876	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7427536	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7427590	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7427642	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7429772	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7431442	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7432132	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs940911	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9637461	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931943	chr3:190860224-191321873	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1008969	chr3:191192569-191383856	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv915689	chr3:191244719-191479974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191272400-191301400	Weak transcription	K562	blood
2	chr3:191283000-191284800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:191283200-191285800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:191284400-191285000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:191284400-191285000	Enhancers	NHEK	skin
6	chr3:191284400-191285200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:191284400-191285200	Enhancers	HMEC	breast
8	chr3:191284600-191285200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:191284600-191285200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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