Variant report

Variant	rs73202993
Chromosome Location	chr7:86756593-86756594
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:86719769..86721576-chr7:86756239..86758017,2	K562	blood:
2	chr7:86756031..86760604-chr7:86784730..86788894,5	K562	blood:
3	chr7:86740834..86746276-chr7:86753431..86758713,6	K562	blood:
4	chr7:86748494..86751720-chr7:86753396..86757160,5	K562	blood:
5	chr7:86678036..86679789-chr7:86754886..86757474,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11762311	0.86[AMR][1000 genomes]
rs11769063	0.86[AMR][1000 genomes]
rs11771569	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11773103	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11971131	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11978231	0.83[AMR][1000 genomes]
rs17161329	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55750589	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55834411	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56378450	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73202978	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73202980	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73202982	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73204819	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73204890	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73204892	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73204895	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206905	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206912	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206916	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206937	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206984	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73208507	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73208517	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73208522	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73208537	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73208546	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73210234	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73210242	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73210250	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73210264	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
5	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv1028503	chr7:86684514-86778047	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1033834	chr7:86691235-86770796	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv539002	chr7:86691235-86770796	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1023137	chr7:86725145-86767689	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86754000-86758000	Weak transcription	HUVEC	blood vessel
2	chr7:86755000-86757000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:86755200-86758400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:86755200-86758400	Weak transcription	Spleen	Spleen
5	chr7:86755600-86758400	Enhancers	GM12878-XiMat	blood
6	chr7:86756200-86756600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:86756200-86757800	Weak transcription	K562	blood
8	chr7:86756400-86756600	Enhancers	H1 Cell Line	embryonic stem cell

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