Variant report

Variant	rs11771569
Chromosome Location	chr7:86838068-86838069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:86838045..86841873-chr7:86845107..86848102,4	MCF-7	breast:
2	chr7:86837870..86839956-chr7:86842681..86845439,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200397	Chromatin interaction
ENSG00000135185	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10487804	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs11760687	1.00[CEU][hapmap]
rs11762311	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs11769063	0.86[AMR][1000 genomes]
rs11771466	1.00[CEU][hapmap]
rs11773103	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971310	0.82[MEX][hapmap]
rs11978231	0.82[MEX][hapmap];0.83[AMR][1000 genomes]
rs17149389	1.00[CEU][hapmap]
rs17149393	1.00[CEU][hapmap]
rs17149512	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs17161323	0.82[MEX][hapmap]
rs17161329	1.00[CEU][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55750589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55834411	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56378450	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73202978	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73202980	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73202982	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73202993	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73204819	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73204890	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73204892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73204895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73206905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73206912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73206916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73206937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73206984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73208507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73210234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73210242	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73210250	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73210264	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs734607	0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1016761	chr7:86758544-86914152	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv888676	chr7:86781423-86858824	Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	nsv1026193	chr7:86790391-86856448	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv539003	chr7:86790391-86856448	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
9	nsv464622	chr7:86832603-87541248	Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
10	nsv607725	chr7:86832603-87541248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86821000-86847400	Weak transcription	Stomach Mucosa	stomach
2	chr7:86822200-86841800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:86825000-86840000	Weak transcription	Ovary	ovary
4	chr7:86825600-86847400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:86825800-86843600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:86826800-86846000	Weak transcription	Fetal Kidney	kidney
7	chr7:86826800-86848200	Weak transcription	Left Ventricle	heart
8	chr7:86828400-86848200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:86829800-86848000	Weak transcription	Right Ventricle	heart
10	chr7:86830000-86839800	Weak transcription	HSMMtube	muscle
11	chr7:86831000-86847200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:86831600-86838400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:86831800-86838800	ZNF genes & repeats	GM12878-XiMat	blood
14	chr7:86832000-86843400	Weak transcription	NHLF	lung
15	chr7:86832200-86840600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:86832200-86843200	Weak transcription	Osteobl	bone
17	chr7:86832200-86846000	Weak transcription	HSMM	muscle
18	chr7:86832400-86841000	Weak transcription	Small Intestine	intestine
19	chr7:86832400-86845600	Weak transcription	Pancreas	Pancrea
20	chr7:86832400-86847200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr7:86833800-86841200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:86834000-86838400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr7:86834000-86838400	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr7:86834600-86847200	Weak transcription	Colonic Mucosa	Colon
25	chr7:86834600-86847400	Weak transcription	Esophagus	oesophagus
26	chr7:86834600-86848200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:86835200-86840800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr7:86835200-86842400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:86835400-86841000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr7:86835800-86846000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr7:86836000-86838400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:86836000-86842000	Weak transcription	Brain Anterior Caudate	brain
33	chr7:86836000-86842200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr7:86836000-86846200	Weak transcription	Fetal Intestine Large	intestine
35	chr7:86836000-86846600	Weak transcription	Hela-S3	cervix
36	chr7:86836200-86842600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:86836200-86845200	Genic enhancers	Primary B cells from peripheral blood	blood
38	chr7:86836200-86847400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr7:86836400-86838800	Weak transcription	Spleen	Spleen
40	chr7:86836400-86840000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:86836400-86840000	Weak transcription	Gastric	stomach
42	chr7:86836400-86840000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr7:86836400-86840000	Weak transcription	Thymus	Thymus
44	chr7:86836400-86840000	Weak transcription	NHEK	skin
45	chr7:86836400-86840200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr7:86836400-86840400	Strong transcription	Fetal Stomach	stomach
47	chr7:86836400-86841400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr7:86836400-86843400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:86836400-86843400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr7:86836400-86843600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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